BAC Information

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BAC

Clone NameMSMg01-486B13
Chromosome7 (Build37)
Map Location 113,831,130 - 113,831,807
singlet/doubletsinglet
Overlap genenone
Upstream geneDnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693
Downstream geneOlfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486B13.T7 (MSMg01no486_b13.b1)MSMg01-486B13.TJ (MSMg01no486_b13.g1)
ACCAG565380AG565381
length1,164749
length of high quality
(start - end)		---678 (70 - 747)
definitionCHROMAT_FILE: MSMg01no486_b13.b1 PHD_FILE: MSMg01no486_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:18 2005CHROMAT_FILE: MSMg01no486_b13.g1 PHD_FILE: MSMg01no486_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTTGGGTGTCTACGGTGTAGGGCGCCCTCCTAAAACTNCTCTTAATAT
TCCCCAAGGGCACGTGCGTCCGGCGTGTAGTATTTTTCAATATTACCATG
CCCATCTTCACTACCTAACCAAAGGACTAGTGCATACAGGCTGCCCCATC
CACGCCTAGGGGGCGTCCGGATAGGTTAGGGCCGGATCTGGAGCAGGAGA
TGGGCATGCAGAGGAGTGAGGACTCCGGTGACAAACAATTGAACACACAA
GATACCGCACGCAATAATAGTATAGAGCAGTGTGAGTACTTCGTGACCAG
CGCGTACTACTGTTACCCTGTTGTTTATAATTCTACCCCCCCTTTTTGTC
CCACTCTTGCGTGTAACCTATGCGACACACACATCTAAATTATGTATACC
ACNCACCAACCACCTAATATAATTATACACAAGTCATTATTGCATCAGCC
ACATGTATTTTATACCCGCCTACAGACGCACACCACTTTCACCATGTCGA
CGTAGTGTCTCCTGTAGATCACACTGCTTTGTACATCTCAGAACCACCGG
ACACGAGAGAAGAGATATACAACCGCTTATAACCCAATGATAATCAAACA
CCTTTAATCTTACATCGCCTCTACGCCACAATGAGACGACGTAGCGTTGG
TAACTTCAATCCGTGATAGAGAGGCGACGGATTACAGACCAGCTCGCACG
TGAGTCGTCTGTACTTGCGACGCTGCAGATATTAATAAATAATTTGAATC
TACTGGTAGCTGATTAAACGATTGACGTCGCGATAGTATTGGTATGCTGC
TATCACGCCCGATAACGTGTCTCTACGTCGTTGTCTATGCANCACCACGG
GGATACGCACCAGATGAAATAGAGTACTAGGACGAGACAGTCCTAATACA
TGACTCATTTATTCCCCTACATCTTACCAGTTCTACACCAGTTGATGTAT
GTTTATTCTCTAGAGTAGCAGTCACACGATCTAAGATTCGCATACATGTC
GCGTATGCACCGACGACCACTGCGACCATGATCACATAAACTATCCTGTA
TATGTGGCGCGCCTAGGTGCGCGCCACACGTCTGGGCACAGCCAGCAGAT
GCGCGTAGAATATCGTGTGTACTAGTTTGTGCATACTCTGCGATGATATC
GATAGCCGCGCGAT

TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAAATGTAGGTGAA
CTATAGAATGACACAAGGAATTCATGGAGATTTCTTTAACTTTAAGAAAG
ATCTTTAAACTCTCCTCACCTCTCCTCCCTCTTCTCTCCTCCTTTCTCTT
TCCCCCTCCTCCCCTCACCTCTACTCTCCTCCTAATTTCTCTTATACAAT
TTCTCTTTCTTTTCTTTTATTCTTCCTTTCATCTTTTTTACAGTGATGGG
AATTGAACACTTACAATTCTACCCTCTGAATAATGAAAGCAGAGAGCGTG
ATGAGACAGCATTTTTCTTTTTTTCCTAACATGTTAAAATGTCTCAACAA
TCACAAAGAATCCATATGTTTACTATTGGTCTAGACAAACATTTTACAAT
CTGTGCATGTCAAAATATCCTATGGTACTCCATCTGCACACATATTATTA
CTTTTATATATAACTGAAACACAAGACAGGACTGTAATCAGAAGTACAAA
TGAGAAGGAGTACACCCATGGATATGAGGAAAGAGCATTCTATTGGTGGG
AATATAAAGTATCATAGCTGCTTTAGAAATCAGTGTGAGGATTTCTAAAA
ATAAAAATCTACAAATAGATCAATAAAAGATTTGAAAGGAAAATAAATTT
AAATTTGAAAAATAGAATAAAGGGGAATATTGTTTTCTTGCTAGCTTAAA
TATGCGGTACGATGGGGTTGGTATTGCTGTTTGTAGAAACTTACTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_b13.g1 MSMg01no486_b13.g1 CHROMAT_FILE:
MSMg01no486_b13.g1 PHD_FILE: MSMg01no486_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:18 2005
         (678 letters)



>mm_chr7_113831086_113832163
          Length = 1078

 Score = 1280 bits (662), Expect = 0.0
 Identities = 674/678 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatggagatttctttaactttaagaaagatctttaaactctcctcacctctcctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 attcatggagatttctttaactttaagaaagatctttaaactctcctcacctctcctccc 663

                                                                       
Query: 61  tcttctctcctcctttctctttccccctcctcccctcacctctactctcctcctaatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcttctctcctcctttctctttccccctcctcccctcacctctactctcctcctaatttc 603

                                                                       
Query: 121 tcttatacaatttctctttcttttcttttattcttcctttcatcttttttacagtgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcttatacaatttctctttcttttcttttattcttcctttcatcttttttacagtgatgg 543

                                                                       
Query: 181 gaattgaacacttacaattctaccctctgaataatgaaagcagagagcgtgatgagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gaattgaacacttacaattctaccctctgaataatgaaagcagagagcgtgatgagacag 483

                                                                       
Query: 241 catttttctttttttcctaacatgttaaaatgtctcaacaatcacaaagaatccatatgt 300
           ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catttgtccatttttcctaacatgttaaaatgtctcaacaatcacaaagaatccatatgt 423

                                                                       
Query: 301 ttactattggtctagacaaacattttacaatctgtgcatgtcaaaatatcctatggtact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttactattggtctagacaaacattttacaatctgtgcatgtcaaaatatcctatggtact 363

                                                                       
Query: 361 ccatctgcacacatattattacttttatatataactgaaacacaagacaggactgtaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccatctgcacacatattattacttttatatataactgaaacacaagacaggactgtaatc 303

                                                                       
Query: 421 agaagtacaaatgagaaggagtacacccatggatatgaggaaagagcattctattggtgg 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 302 agaagtacaaatgagaaggagtacactcatggatatgaggaaagagcattctattggtgg 243

                                                                       
Query: 481 gaatataaagtatcatagctgctttagaaatcagtgtgaggatttctaaaaataaaaatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaatataaagtatcatagctgctttagaaatcagtgtgaggatttctaaaaataaaaatc 183

                                                                       
Query: 541 tacaaatagatcaataaaagatttgaaaggaaaataaatttaaatttgaaaaatagaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tacaaatagatcaataaaagatttgaaaggaaaataaatttaaatttgaaaaatagaata 123

                                                                       
Query: 601 aaggggaatattgttttcttgctagcttaaatatgcggtacgatggggttggtattgctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aaggggaatattgttttcttgctagcttaaatatgcggtacgatggggttggtattgctg 63

                             
Query: 661 tttgtagaaacttactct 678
           ||||||||||||||||||
Sbjct: 62  tttgtagaaacttactct 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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