BAC Information

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BAC

Clone NameMSMg01-486B14
Chromosome7 (Build37)
Map Location 53,110,908 - 53,111,017
singlet/doubletsinglet
Overlap geneGrin2d
Upstream genePnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1
Downstream geneKdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486B14.T7 (MSMg01no486_b14.b1)MSMg01-486B14.TJ (MSMg01no486_b14.g1)
ACCAG565382AG565383
length792742
length of high quality
(start - end)
109 (129 - 237)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no486_b14.b1 PHD_FILE: MSMg01no486_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:18 2005CHROMAT_FILE: MSMg01no486_b14.g1 PHD_FILE: MSMg01no486_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAAACTTATAATTGCGGCGCTAAACGACTCACATAGTTCGTGACGCGC
NGGANTCNNGNNTCCTAGCAATACAGTGGGCCCTCGAGAGATGCAGACTA
GACCACCCCCAATAGCTATCTTGACACCATTAGGCTGAGGTGAAGAGAGA
GAGGCACAGGGTGGCTGTTGGTGTGGATAGGACAGGAGAGGGTGGTGTTG
TTGTTGGGTTTTTTTGTTTGTTTGTTTGGGTTTTTTTTTCGCGNCCNCTT
TTTTTTTTCCCCCCNNCGCGCNCNNGCCCCGCCCCTGGGCGCGGGGGGCC
CCCGCGGCGGGGCGTTTTCCTCCGTTGTGCGCCGCGCCCGCCCGNGCCCG
GGCCGCGGCTTTTTTTTTTCCCCCCGCCCGGTGGCGGGGGTGGGTGTGCG
GTTTTTTTGTTTTTGCGGCCTGCCTCCTTTTTTTGTTGTTGGGCGCCGTT
CGTCCGGGTGTGCTCTGCGGTTGCCCGTTTGGCTTCCTTTGGTTGCTGTT
TCTCTGGCTTTGGTTGTCTCCTTCGGTTTCTTTCTTTGGCTTTTGCCTTC
CTCCTTTTTTCTCTTTTTTCGGTCCTCGCGCTTTTTCTTCTCTGGGCCCT
TTTGGGTTTGTTTTCTCCCGTGCTTCCTTTCTTTTCCTTCTGTTTTTCCG
TTCCTTTTATCTCGTCGCTGCCGTTTTTGTCTCTTTTTTTTTTTTTTTTT
TCTTCCCACCTCTGTCTCTTTTGTTTCTTTTCCTGCCTTCGTCGTCTTCT
TCCTATCCCTTCGTTTTCTGCGTTTTTGGTGCCGTGCCGGGG
CTCATTGCAGTGGTAGGCGTGGNGGCCGCCGTTCAAAAAATGTAGGTGAA
CTATAGAATGCCACAAAGAAATTCCTGGNAGAATACAGGCCTGTGGATGC
TGGATGAGCCCTCAATTTATGTGGGTGGGGTTTTGTTGTTTTAGGGTTTT
CTTTTCTTTTTCACAATGTCTCACCATGCAGTCTTCACAGCCTGGAACTA
TGTAGACCTGGCTGGCCTTGAACTCACGGAGATCCACCTGCCTTGTCTCC
TGCGTGCTGGGATTAAAAGTGTGCCCACCACGCCCGGCAGGTTATGCGGT
TTTCAAGACCTTNCTATTCTCTCCTGCCCATCAGTCCTCAGGAGGCAGAA
GCAAGGTCAGAAGTTCTAGGTCGGTCGGGGCTTCACGCGGGAGGAGCTCT
CCCCTGAGCTGGTTCTCCTCCACCAGACAGACAGATACACCAGGTTTCCT
AGTGTTTCTGATAAACAGGGGGTGTGGGAGGCACAGAGGTCCTTGTGCTC
ACGGACGAGCACTGGGGGAGCCAGGAATAGTTACAACACGGGTTGTCTCT
TCACAGGAAGAAATGTGTCACCCACTTCCCACCCAGAAAGTTGGGAATGG
ACATGGTTGATATCCTGGTGACCCTTGCATCACCCCGGATTCTCCCCATC
ACCCTCACCTCGGGGTTGTTTTCTTAGTTAAATCTTTTGCAAAGAATTTC
ACTCGTGCCTTTACAAGGGGTTTTCACGTTCTAAGCTTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_b14.b1 MSMg01no486_b14.b1 CHROMAT_FILE:
MSMg01no486_b14.b1 PHD_FILE: MSMg01no486_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:18 2005
         (109 letters)



>mm_chr7_53110708_53111217
          Length = 510

 Score =  205 bits (106), Expect = 6e-58
 Identities = 109/110 (99%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggctgaggtgaagagagagaggcacagggtggctgttggtgtggataggacaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 attaggctgaggtgaagagagagaggcacagggtggctgttggtgtggataggacaggag 251

                                                             
Query: 61  agggtggtgttgttgttgggtttttttgtttgtttgtttggg-ttttttt 109
           |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 250 agggtggtgttgttgttgggtttttttgtttgtttgtttggggttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 510
Length adjustment: 8
Effective length of query: 101
Effective length of database: 502
Effective search space:    50702
Effective search space used:    50702
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)