BAC Information

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BAC

Clone NameMSMg01-486L12
Chromosome7 (Build37)
Map Location 120,576,583 - 120,577,241
singlet/doubletsinglet
Overlap genenone
Upstream geneParva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736
Downstream geneMlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486L12.T7 (MSMg01no486_l12.b1)MSMg01-486L12.TJ (MSMg01no486_l12.g1)
ACCAG565856AG565857
length723744
length of high quality
(start - end)
536 (75 - 610)659 (78 - 736)
definitionCHROMAT_FILE: MSMg01no486_l12.b1 PHD_FILE: MSMg01no486_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:06 2005CHROMAT_FILE: MSMg01no486_l12.g1 PHD_FILE: MSMg01no486_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATC
GGCGGAATTCTCTCACCTTCCCTGGAGTAGCCGGAGTTGGTATTTGAGTC
ACAGTCCTTTTTCTAGCCTCTGTCAGCCACCGTTTTTCATCCCGGAGGGT
ATATCTCAGGTAGACCACTTCCTTCTGACATAGCTGGGCTTTTTTAGCAG
AGGCCCGGTAACCCAACTCACCCAGTTCTGCTAGCAATCTCTTGGTCCCC
TGCCAACATTCTCTTCCATGGTTGCAGTAAGGAGTAACATATTGAAGCAG
AGTTACCTGGGAGTTTTCAGCTCAGAAGGAGGCTAAATCTCGATGTAGAG
CCTCATCAAAAAGGGTGGGGGAGTTTTTGAACTCCTGGGGTAACCACATC
CAGGTCAATTGTCCTGTTTGCCCACCGCCAGGATCTCTCCACTCAAAGAC
GAATATGTGCTGGCTGGAGGGATGTAACTTCAGGCAAAAGAAAGCATCTT
TTANATCAAGTACTGTATACCATTTTCGCTCCGGAGGGAGTAAGCTGAGG
AGGTTATAGGGATTAGGAACAGTTGGGTGAATATCTTGGACCCTCTTATT
GACCTCTCTCAGGTCTTGGACTGGTCAGTAGTCACTCGTGCCAGGTTTCT
TTACCGACAGTTAAGGAGTATTCCAGGGTGACTGGCAAGGTACCAAAATA
CCTAATTGTAATAATCTCTGAAT
CTCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGGAAGTGACCTACGATCAG
TTCAACCGAGTGACCTATGATCCAGAACCAAGGTGGATAAAACAGTAACT
TCACAACCTGGGGATTAAGTAGATTAAAGAATAAACCTGACTGAAAATAA
AAAGAGGATATGCCCATGGCAGAAAAATAAAAATGAAGCAATCCTTCCTG
TGTAAGTCAATCCAGGTAATACAAAGAATCACATGTCGAGGGTGGAAGTA
GAGATCTGGCAGAGAGCACTTAAGAAAACTTTCATTATCCCAAAGTAGAA
GAACATTTCTTAAAACCAGCACTGGTCATACAAAGGAGACTTCACAATGC
AGAACTTCAGCAAAGGCAAATACAAAGTGAAAAAGGGCCATATCTTCAAA
ATATCTCATATATACCAACTGCTATGTAGCAGAGAAAACAAGCCATTAAA
AGGTGGCAAACGTATTTAAACGTGTATTTTTTGAGATGAGGACATGGGGC
AAGAGATAGAGCTCAGTGGAAGAGTGCCTGCTGGGCAAGGATAAAATTCC
ATCAGCACAAACTATCTAATGCTCAAGGAGTGGCCTTCAACTGTACTTTA
AACCAAATATAAAACCAAATATAAAATTTAACTCAGTGAGTAGAGAGAGA
GCCCAATGGTAGGTTGTTAGCCCGGCACACACAGGGACTCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_l12.g1 MSMg01no486_l12.g1 CHROMAT_FILE:
MSMg01no486_l12.g1 PHD_FILE: MSMg01no486_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:06 2005
         (659 letters)



>mm_chr7_120576383_120577441
          Length = 1059

 Score = 1251 bits (647), Expect = 0.0
 Identities = 656/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaggaagtgacctacgatcagttcaaccgagtgacctatgatccagaaccaaggtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaggaagtgacctacgatcagttcaaccgagtgacctatgatccagaaccaaggtgga 260

                                                                       
Query: 61  taaaacagtaacttcacaacctggggattaagtagattaaagaataaacctgactgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaacagtaacttcacaacctggggattaagtagattaaagaataaacctgactgaaaa 320

                                                                       
Query: 121 taaaaagaggatatgcccatggcagaaaaataaaaatgaagcaatccttcctgtgtaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaagaggatatgcccatggcagaaaaataaaaatgaagcaatccttcctgtgtaagt 380

                                                                       
Query: 181 caatccaggtaatacaaagaatcacatgtcgagggtggaagtagagatctggcagagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatccaggtaatacaaagaatcacatgtcgagggtggaagtagagatctggcagagagc 440

                                                                       
Query: 241 acttaagaaaactttcattatcccaaagtagaagaacatttcttaaaaccagcactggtc 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaagaaaactttcattatcccaaagtagaagaacatttcttaaaaccagcactggtc 500

                                                                       
Query: 301 atacaaaggagacttcacaatgcagaacttcagcaaaggcaaatacaaagtgaaaaaggg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 atacaaaggagacttcacaatgcagaacttcagcaaaggcaaatacaaagtgaaaagggg 560

                                                                       
Query: 361 ccatatcttcaaaatatctcatatataccaactgctatgtagcagagaaaacaagccatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatatcttcaaaatatctcatatataccaactgctatgtagcagagaaaacaagccatt 620

                                                                       
Query: 421 aaaaggtggcaaacgtatttaaacgtgtattttttgagatgaggacatggggcaagagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaggtggcaaacgtatttaaacgtgtattttttgagatgaggacatggggcaagagat 680

                                                                       
Query: 481 agagctcagtggaagagtgcctgctgggcaaggataaaattccatcagcacaaactatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagctcagtggaagagtgcctgctgggcaaggataaaattccatcagcacaaactatct 740

                                                                       
Query: 541 aatgctcaaggagtggccttcaactgtactttaaaccaaatataaaaccaaatataaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgctcaaggagtggccttcaactgtactttaaaccaaatataaaaccaaatataaaat 800

                                                                      
Query: 601 ttaactcagtgagtagagagagagcccaatggtaggttgttagcccggcacacacaggg 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaactcagtgagtagagagagagcccaatggtaggttgttagcccggcacacacaggg 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)