BAC Information

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BAC

Clone NameMSMg01-488A17
Chromosome7 (Build37)
Map Location 86,410,237 - 86,585,328
singlet/doubletdoublet
Overlap geneAbhd2, Rlbp1, BC025462
Upstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8
Downstream genePolg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488A17.T7 (MSMg01no488_a17.b1)MSMg01-488A17.TJ (MSMg01no488_a17.g1)
ACCAG566862AG566863
length696678
length of high quality
(start - end)		627 (48 - 674)635 (44 - 678)
definitionCHROMAT_FILE: MSMg01no488_a17.b1 PHD_FILE: MSMg01no488_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:50 2005CHROMAT_FILE: MSMg01no488_a17.g1 PHD_FILE: MSMg01no488_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,410,237 - 86,410,865)(86,584,695 - 86,585,328)
sequence
GACTCACTGTCCCGAGAGGATCCGCGGAATTCCAAGTTTGCAGCTTCAAC
AAGATCATAGAAGGAGCCGGGTGGTGGTGGCACATGCCTTTAATCCCAGC
ACTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAGGCCAGCCTGGTC
TACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTC
AAAAACTAAAATAACAAAACAAACAAACAAAGATCATAGAAGGAAACCTC
CCAAAACTAATAAAAAACACACCAATACAGATATACATGGGGCACATATG
ACATCTGATGGATTCAACCAAAAAAGAACCTTCCCATGACATATCATAAT
GAAAAGACAGTGTATTGAAAGTTTCAGGAGAAAAAAAAAAAAAAAAACCA
TGTATCTCATGACAGTCTGCCTTGCTGCAAGCCTAAAGCTTTAGATCAAG
AGATTGAAACCTCAAGCCAAATAAACTTTCTTCCTTTAAGTGATTTATCT
CAGTATTTGCCACAGAGATGGAAAGCTGAGGAACGCAGATCTGCATCTAG
AGTATTCAAGGCCTCCCCCAACTCAGTAGTGAAAAAAATACATGCTATGA
CGTAGATGAACTTTGACAAAGTGAAAGACAGTCACAAATGACATATATTA
TTCCATTTATGTGAAATTTCCAGGATAGGTGAACCTGTGAATACAG

GCCTGTCCGACAAAGTTAGGTGAACTATAGAATGTCCCGAGGAATTCTCT
TGAAAACTAGGGTGGTTTCTTATCTCACTGCCTGCAGTATAAGAGGAGCA
AACTGAAGTTTTTGGTGCTGGAACTTAGCAGTGGCCTCAGTGTTAGCCAT
AACCTCAGGGTTAGCCATGACCTCAGTGTTAGCCATGACCTTAGGATCAG
CCAGTGTCTCAGGGTCAGCCATGGCCTCAGGGTTAGCCAGTGTCTTAGGG
TCAGACATGACCTCAGGGTTAGCCAGCGTCTCAGGGTCTTTTATGTCCTC
AGGGTTAGTCATGCCCCAAACTCAGCTCCCCTGATACCTGTGCCCTGACA
ATGGAACGAATTTGATTTGTCTGGCAGTCTTCCTGACTACAATGGAGCTC
CCTGCAGGACTGTTTTGCCTTCCTGTTTCTGCTATATACTTCAGCAACAA
GTCCTGGGACATGTTAGTAATATAGAAATTTTATAAGTGGAACACACTGA
TACTCTGACAATTACTGATGAGAAACTTAATGGAGTCACCTTTCCAGTCC
CTGTATTAGACGGGGCCAAATTATACCATGTGATCAAAGCCATTAGGCCT
GGCTCCAGGAGAAATGGCTTCCTCTTTATGTCACCTTGAACAATGATCCT
TGTGGACCACAGGTTCTGCTGGCTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_a17.b1 MSMg01no488_a17.b1 CHROMAT_FILE:
MSMg01no488_a17.b1 PHD_FILE: MSMg01no488_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:50 2005
         (627 letters)



>mm_chr7_86410039_86411065
          Length = 1027

 Score = 1129 bits (584), Expect = 0.0
 Identities = 618/632 (97%), Gaps = 8/632 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaagatcatagaaggagccgggtggtggtggcacatgcctttaatcccagcacttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aacaagatcatagaaggagccgggtggtggtggcacatgcctttaatcccagcacttggg 258

                                                                       
Query: 61  aggcagaggcaggcagatctctgagttcaaggccagcctggtctacaaagtgagttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aggcagaggcaggcagatctctgagttcaaggccagcctggtctacaaagtgagttccag 318

                                                                       
Query: 121 gacagccagggctatacagagaaaccctgtctc-aaaaactaaaataaca----aaacaa 175
           ||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||
Sbjct: 319 gacagccagggctatacagagaaaccctgtctcaaaaaactaaaataacaaaacaaacaa 378

                                                                       
Query: 176 acaaacaaagatcatagaaggaaacctcccaaaactaataaaaaacacaccaatacagat 235
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  
Sbjct: 379 acaaacaaagatcatagaaggaaacttcccaaaactaataaaaaacacaccaatacag-- 436

                                                                       
Query: 236 atacatggggcacatatgacatctgatggattcaaccaaaaaagaaccttcccatgacat 295
           |||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 437 atacatggggcacacaggacatctgatggattcaaccaaaaaagaaccctcccacgacat 496

                                                                       
Query: 296 atcataatgaaaagacagtgtattgaaagtttcaggagaaaaaaaaaaaaaaaaaccatg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 497 atcataatgaaaagacagtgtattgaaagtttcaggagaaaaaaaaaaaaaaaaa-catg 555

                                                                       
Query: 356 tatctcatgacagtctgccttgctgcaagcctaaagctttagatcaagagattgaaacct 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 556 tatctcatgacagtctgccttgctgcaagcctaaagctttagatcaagagattgaaactt 615

                                                                       
Query: 416 caagccaaataaactttcttcctttaagtgatttatctcagtatttgccacagagatgga 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caagccaaataaactttcttcctttaagtgatttatctcagtatttgccacagagatgga 675

                                                                       
Query: 476 aagctgaggaacgcagatctgcatctagagtattcaaggcctcccccaactcagtagtga 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aagctgaggaacgcagatctgcatctagagtattcaaggcctcccccaactcagtagtga 735

                                                                       
Query: 536 aaaaaatacatgctatgacgtagatgaactttgacaaagtgaaagacagtcacaaatgac 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaaaaatacatgctatgacgtagatgaactttgacaaagtgaaagacagtcacaaatgac 795

                                           
Query: 596 atatattattccatttatgtgaaatttccagg 627
           ||||||||||||||||||||||||||||||||
Sbjct: 796 atatattattccatttatgtgaaatttccagg 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_a17.g1 MSMg01no488_a17.g1 CHROMAT_FILE:
MSMg01no488_a17.g1 PHD_FILE: MSMg01no488_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:50 2005
         (635 letters)



>mm_chr7_86584495_86585529
          Length = 1035

 Score = 1172 bits (606), Expect = 0.0
 Identities = 627/638 (98%), Gaps = 8/638 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcttgaaaactagggtggtttcttatctcactgcctgcagtataagaggagcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 attctcttgaaaactagggtggtttcttatctcactgcctgcagtataagaggagcaaac 775

                                                                       
Query: 61  tgaagtttttggtgctggaacttagcagtggcctcagtgttagccataacctcagggtta 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 774 tgaagtttttggtgctggaacttagcagtgacctcagtgttagccataacctcagggtta 715

                                                                       
Query: 121 gccatgacctcagtgttagccatgaccttaggatcagccagtgtctcagggtcagccatg 180
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 714 gccatgacctcagtgttagccatgacctcagggtcagccagtgtctcagggtcagccatg 655

                                                                       
Query: 181 gcctcagggttagccagtgtcttagggtcagacatgacctcagggttagccagcgtctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gcctcagggttagccagtgtcttagggtcagacatgacctcagggttagccagcgtctca 595

                                                                       
Query: 241 gggt----cttttatgtcctcagggttagtcatgccccaaactcagctcccctgatacct 296
           ||||    |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gggtcagcc----atgtcctcagggttagtcatgccccaaactcagctcccctgatacct 539

                                                                       
Query: 297 gtgccctgacaatggaacgaatttgatttgtctggcagtcttcctgactacaatggagct 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtgccctgacaatggaacgaatttgatttgtctggcagtcttcctgactacaatggagct 479

                                                                       
Query: 357 ccctgcaggactgttttgccttcctgtttctgctatatacttcagcaacaagtcctggga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccctgcaggactgttttgccttcctgtttctgctatatacttcagcaacaagtcctggga 419

                                                                       
Query: 417 catgttagtaatatagaaattttataagtggaacacactgatactctgacaattactgat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 catgttagtaatatagaaattttataagtggaacacactgatactctgacaattactgat 359

                                                                       
Query: 477 gagaaacttaatggagtcacctttccagtccctgtattagacggggccaaattataccat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagaaacttaatggagtcacctttccagtccctgtattagacggggccaaattataccat 299

                                                                       
Query: 537 gtgatcaaagccattaggcctggctccaggagaaatggcttcctctttatgtcaccttga 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtgatcaaagccattaggcctggctccaggagaaatggcttcctctttatgtcaccttga 239

                                                 
Query: 597 acaatgatccttgtggaccacaggttctgctggctgga 634
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acaatgatccttgtggaccacaggttctgctggctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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