Query= MSMg01no490_m08.b1 MSMg01no490_m08.b1 CHROMAT_FILE:
MSMg01no490_m08.b1 PHD_FILE: MSMg01no490_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:27 2005
(566 letters)
>mm_chr7_76648881_76649846
Length = 966
Score = 1000 bits (517), Expect = 0.0
Identities = 553/565 (97%)
Strand = Plus / Plus
Query: 2 gagactcctctgagccatgcctatagggctgtttctatgatgattctaaatgctatctgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gagactcctctgagccatgcctatagggctgtttctatgatgattctaaatgctatctgt 261
Query: 62 cttagttagggttttactgctgtgaacagacaccatgaccaaggcaagtcttataaaaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cttagttagggttttactgctgtgaacagacaccatgaccaaggcaagtcttataaaaaa 321
Query: 122 acaacatttacttggggctggcttacaggttcagaggttcagtccattatcttcaaggtg 181
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 322 acaacatttacttggggctggcttacaggttcagaggttcagtccattatcaccaaggtg 381
Query: 182 ggagcatggcagtatccaggcaggcatggcgcaggagtagctgagagttctatgtttttt 241
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct: 382 ggagcatggcagtatccaggcaggcatagcgcaggaggagctgagagttctatgtcttta 441
Query: 242 tctataggctgctagtggaagactgacttccaggcaactatggtgaggatcttatacgca 301
|| | ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 442 tccaaaggctgctagtggaagactgacttccaggcaactagggtgaggatcttataccca 501
Query: 302 cacccacagtgacacacccattccaacgaggtcacacccactccaacaaggccacacctt 361
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 502 cacccacagtgacacacccattccaacgaggtcacacctattccaacaaggccacacctt 561
Query: 362 cagatggtgccactccctggtccaaggatacacaaaccatcacactatcgatttgaaaat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cagatggtgccactccctggtccaaggatacacaaaccatcacactatcgatttgaaaat 621
Query: 422 taagtttaagcacaagagtgtctttgattacagatatgacaggagcatcttataaaatgg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taagtttaagcacaagagtgtctttgattacagatatgacaggagcatcttataaaatgg 681
Query: 482 taattataagccagttataataaactagagtcacaaaatctaggtaaaatatttgtaaat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taattataagccagttataataaactagagtcacaaaatctaggtaaaatatttgtaaat 741
Query: 542 tgacctatgactttaagtaacaagg 566
|||||||||||||||||||||||||
Sbjct: 742 tgacctatgactttaagtaacaagg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_m08.g1 MSMg01no490_m08.g1 CHROMAT_FILE:
MSMg01no490_m08.g1 PHD_FILE: MSMg01no490_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:27 2005
(329 letters)
>mm_chr7_76798321_76799049
Length = 729
Score = 584 bits (302), Expect = e-171
Identities = 318/324 (98%), Gaps = 2/324 (0%)
Strand = Plus / Minus
Query: 6 cattctatgtatagcaaatatggtattataatatagctaataatgtaatacatgctatgt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cattctatgtatagcaaatatggtattataatatagctaataatgtaatacatgctatgt 670
Query: 66 acaacatatactataatatagctcaccatgtaatatataatatgtataatatatactata 125
||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 669 acaacatatactataatatagctaatcatgta--atataatatgtataatatatactata 612
Query: 126 taataatatacctaatactagttttcaccctgtatcagaggcagtttatctttcttttat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taataatatacctaatactagttttcaccctgtatcagaggcagtttatctttcttttat 552
Query: 186 ttaataaaataaattaataaatctgggatccatacagatatagaacatttaggtaaatac 245
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 551 ttaataaaataaattaataaatctgggatccagacagatatagaacatttaggtaaatac 492
Query: 246 cacttgaactgttaaagatgtcagtttacccaggctgccataactgaatgccccacaggg 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 cacttgaactgttaaagatgtcagtttacccaggctgccataactgaatgccccacagag 432
Query: 306 atagctaaataaaaagatgtattt 329
||||||||||||||||||||||||
Sbjct: 431 atagctaaataaaaagatgtattt 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
