BAC Information

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BAC

Clone NameMSMg01-492A06
Chromosome7 (Build37)
Map Location 3,157,211 - 3,157,452
singlet/doubletsinglet
Overlap geneAU018091
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1
Downstream geneLOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492A06.T7 (MSMg01no492_a06.b1)MSMg01-492A06.TJ (MSMg01no492_a06.g1)
ACCAG569873AG569874
length643715
length of high quality
(start - end)
---242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no492_a06.b1 PHD_FILE: MSMg01no492_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:07 2005CHROMAT_FILE: MSMg01no492_a06.g1 PHD_FILE: MSMg01no492_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCACCCCCAGCCTCCGCCAGCGCAAATTCCAAGAGAGAGGGANNGGGGG
AAAAAGAANCACCAAAAAATTGCGGCCGCGAAACGACTCACGATATTCCA
CAGAGGGCNGGAANCCNGAACTTTCAAGAAAAGGACANGAAGGGGGNNGG
ACNNGNCAAAGCNNNCCCNGAACTAACGAGAAGAACAGGNNGNNNTNNGC
AAGAGNNGGNNAAAACGGGATTACGTGAAGGAATAACGAGATAAAACAAG
CCCGGAACCCCGGAAAAAAAACAACTGGGCCAGAAAGGAAAAAGGGCCCC
AAAAAGGCGCCGGGGGAACCAGGAGAACCGAGAAAACAAAGGGGGAAAAA
TGGGGGACCAACGACCCCAAAAGGTATAATGGGGGCCCAAAAAAAACCCC
CGAAAACCCGCGGGGGGGGGGGAAAACAAATCGCGGGGGGGGGGCTAGGG
GGGGGCACAAAGAAAAAAAATAGGGGGGGGGGGCCGCGCGCGAAAAAAAA
ACAAAAGANGGGGGGGAAAAAAAAAAACAAACACGCCCCCGATAGATCCC
CCACCACAAGAAAAGCAAGCGCGAGGGCCCCCAAGAAAAAAAAGGAGATG
CCGAGAAAGGGAGGAAGGCGGGAGGGACCCGAGGAGGCACCGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCTATGCTCAGTTTGAGCAAACAAAC
AAAAATCCCAAAGTGTTCCCTCACCCAAGTCTGGGAGATGTAATTCAGTG
GTAGAATACTTGCTTAATATGCATGAAACCCTGGGTGCAGTCCCCAGTAC
TGAATAGAAGTCAGATGGAGGTGGGAATGTAGTCGGTTGGTGGAGCAATA
GTGTAGAATGCATGAAGTCTTGGGTTTGATACTAGCACCACAATCCCAGC
ACAGGTGAAGTGCAGGGTCTGGGAGAACCAGGAGTTCGGGGACTTCTTTG
AGACTCTATGTCCAAAAAATAAGGCATCTGCTGCTGGGTGTGGTAGTGTG
TGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAAGCAGATCTCTGAGTT
TGAGGCCAGCCTGGTCTAGAGAATGGGTTCCAGCACAGGTGGGATTACGC
ATAGAAACTCTGTCTCAAAAAAAAAAAAAAATAAGCAAAACTGAAATCTA
TCCAATCAATGACATCTCATGGCTTGGAAAGATGGCTCCTTGGCTTAATA
TCACTGGTCAGTACTGTTAGACTGGTAAGACTTCTGAAGGGCCTGAGTTT
AATTCCCATCAGCCACTTGGTGGCTGTCAATTTTCTGTAATGGAAACTGA
TTCCCTTTTCTGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_a06.g1 MSMg01no492_a06.g1 CHROMAT_FILE:
MSMg01no492_a06.g1 PHD_FILE: MSMg01no492_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:07 2005
         (242 letters)



>mm_chr7_3156880_3157521
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggctatgctcagtttgagcaaacaaacaaaaatcccaaagtgttccctcacccaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaggctatgctcagtttgagcaaacaaacaaaaatcccaaagtgttccctcacccaagtc 514

                                                                       
Query: 61  tgggagatgtaattcagtggtagaatacttgcttaatatgcatgaaaccctgggtgcagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 513 tgggagatgtaattcagtggtagaatacttgcttaatatgcatgaaaccctgtgtgcagt 454

                                                                       
Query: 121 ccccagtactgaatagaagtcagatggaggtgggaatgtagtcggttggtggagcaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccccagtactgaatagaagtcagatggaggtgggaatgtagtcggttggtggagcaatag 394

                                                                       
Query: 181 tgtagaatgcatgaagtcttgggtttgatactagcaccacaatcccagcacaggtgaagt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttagaatgcatgaagtcttgggtttgatactagcaccacaatcccagcacaggtgaagt 334

             
Query: 241 gc 242
           ||
Sbjct: 333 gc 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)