BAC Information

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BAC

Clone NameMSMg01-492D12
Chromosome7 (Build37)
Map Location 16,671,103 - 16,671,545
singlet/doubletsinglet
Overlap geneZfp541
Upstream geneLOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1
Downstream geneNapa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492D12.T7 (MSMg01no492_d12.b1)MSMg01-492D12.TJ (MSMg01no492_d12.g1)
ACCAG570027AG570028
length715869
length of high quality
(start - end)
443 (121 - 563)---
definitionCHROMAT_FILE: MSMg01no492_d12.b1 PHD_FILE: MSMg01no492_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:23 2005CHROMAT_FILE: MSMg01no492_d12.g1 PHD_FILE: MSMg01no492_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCATTTGTGGCGTTGAAAGAGNCACTAATTTCAGAAATGCGCGGAATTC
TCTTATTTTCCCCAGACTTCCAGAATTGTGTTAGCTGCCATAGGTCCATT
GCATTACTGTATAATTTTAGGATCAGTGGTTATTTTAATAGTTACTCTGT
TTAATATGTACATAAGTTAGAAAGTATTACTATCCTAAATAATTTAGACC
TTTCTATTCATGATGGACCAGACCATCTTCCCATTTATTTAGGACTTGTT
GTACTTTGTCCCAATCATTTTTCCCAGTGTGTGTCTTACATATCTTTGCT
TGTAGCTGTTTTTTTTAGATAGGATCTCTATACGGTCCAGGCTGGCCTGG
AACTCCCCATTCTCCCACCTGTGTCTCCCAAGTGGTGGAAAGGCAGGCAC
ATGCCATTTGTTGTGCAGTAGACATCTTTCCTTAGCAGAATCCGTTTAGA
TTTGTGTTCATGTAGTAATGGTGAAGGGCAGAGACACTGCATTCTCCATC
TCATGGGCCTTTCCTGTGCCATCTGTTTCTAAGCAGATGTGTCAGCAGAC
TCCATTCTGAACTGTTGTCCTTACAACTTTATGTACAATTTTATAGATTT
GGTCACATGAAGTCAAAGCAATAGAAGAAAGCATGCCCTGCCTGCTGAGT
TTGCTGTACCCTTCATTGCCATTCTATGCCTGCCGTAATTCCTATGGGGC
TATTACCATTGGGTG
TTATCTGTNNANNCCGGNNNNCCGCCTGGCTTCAAAATTTAGGNNGAANT
ATANAATTTTTCCAAAAAATATCAATGAAANTTTATTTANAAANACATGN
TGNNANGNTGGGTGTTATCATAANCNTTTGNTCTTGGNNCGTTATTGTTA
ANTTGTTTCCAATTCACCTATNACAGGGCCCTCCGGTGACAGGAATCCTG
GTAATGACAAANTGCNTGGTCTTTTTTCCCTGAACACACTTGCCCAACCC
ACAATATTTCTTTAAACGGACAAGTGAACTGAGTCCCCGATCTCATATCT
GGGGGAAATTTCCCCCCNNNNNNCCCTTTTATGAGGGTGTATGCGGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAATCTGGA
AGGGAGGGGGGGCGAGGGNNNNTNNNNNNNTTTATATAGTGGAGGGCTGG
GGAGAGAAGAACNNNAAGGGTCTGGGGGGGGGGGGGGGGGCGGGAGGGGG
GGGGAGGGGGGGGGGGGCGGGGGGGGGGGGGGGCAGGGGGGGGAGAAGGG
GCNNNTNATNNTTTNNTTTANAATTTATTAAATAATNNNNTTCTATTNNN
TNTATNNTTNTTNTTTTTTAATATANTNNTTACTTTNTNATAAAATTAAT
ATAATAAAAGTGTTCTGGTGTNTATANTTANTTNTATTAGGATGGGTGGG
CGGGGGGTTTGGCNTCGCTNTTTTTTTCTTNTTTTTCTTNTTCCTTATCC
CTTTTTTCATTTTCCCATCTTCCTTCACCATTTAATATTCCCTTTTTATA
TTTCTCCTATCTCCTATTACTCCTTTCTATTTCCCTTTTCTTTCCTTCCT
TCTTACCCTCCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_d12.b1 MSMg01no492_d12.b1 CHROMAT_FILE:
MSMg01no492_d12.b1 PHD_FILE: MSMg01no492_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:23 2005
         (443 letters)



>mm_chr7_16670903_16671745
          Length = 843

 Score =  857 bits (443), Expect = 0.0
 Identities = 443/443 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcagtggttattttaatagttactctgtttaatatgtacataagttagaaagtattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcagtggttattttaatagttactctgtttaatatgtacataagttagaaagtattac 260

                                                                       
Query: 61  tatcctaaataatttagacctttctattcatgatggaccagaccatcttcccatttattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcctaaataatttagacctttctattcatgatggaccagaccatcttcccatttattt 320

                                                                       
Query: 121 aggacttgttgtactttgtcccaatcatttttcccagtgtgtgtcttacatatctttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacttgttgtactttgtcccaatcatttttcccagtgtgtgtcttacatatctttgct 380

                                                                       
Query: 181 tgtagctgttttttttagataggatctctatacggtccaggctggcctggaactccccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagctgttttttttagataggatctctatacggtccaggctggcctggaactccccat 440

                                                                       
Query: 241 tctcccacctgtgtctcccaagtggtggaaaggcaggcacatgccatttgttgtgcagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcccacctgtgtctcccaagtggtggaaaggcaggcacatgccatttgttgtgcagta 500

                                                                       
Query: 301 gacatctttccttagcagaatccgtttagatttgtgttcatgtagtaatggtgaagggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacatctttccttagcagaatccgtttagatttgtgttcatgtagtaatggtgaagggca 560

                                                                       
Query: 361 gagacactgcattctccatctcatgggcctttcctgtgccatctgtttctaagcagatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagacactgcattctccatctcatgggcctttcctgtgccatctgtttctaagcagatgt 620

                                  
Query: 421 gtcagcagactccattctgaact 443
           |||||||||||||||||||||||
Sbjct: 621 gtcagcagactccattctgaact 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)