Query= MSMg01no493_o08.b1 MSMg01no493_o08.b1 CHROMAT_FILE:
MSMg01no493_o08.b1 PHD_FILE: MSMg01no493_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:36 2005
(586 letters)
>mm_chr7_70995648_70996633
Length = 986
Score = 1118 bits (578), Expect = 0.0
Identities = 581/582 (99%)
Strand = Plus / Plus
Query: 5 gaattctgggctcttccagcacccggcaccctgtctatctatattcccaccatgatgata 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggctcctccagcacccggcaccctgtctatctatattcccaccatgatgata 264
Query: 65 atggactaaaccgctgaaaactatgtcaactccaaatcaaatgctttcttttataagagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggactaaaccgctgaaaactatgtcaactccaaatcaaatgctttcttttataagagt 324
Query: 125 tgccttcgtagtagagtcgcttcgcagcaaggaaacctaaactaagacagacagacaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgccttcgtagtagagtcgcttcgcagcaaggaaacctaaactaagacagacagacaaac 384
Query: 185 atgatacagacaatgtggttatagatgagagatacaatagtgcagtaggtagaaaaaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgatacagacaatgtggttatagatgagagatacaatagtgcagtaggtagaaaaaaag 444
Query: 245 tgatgtaataacagagtcaggaatcacagaagatttggagatcaccttgaaatcagagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgatgtaataacagagtcaggaatcacagaagatttggagatcaccttgaaatcagagaa 504
Query: 305 gaggtcaccagctaaggaatgaaggtgacctctagatgttgggaaaggtgagaagtcgcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggtcaccagctaaggaatgaaggtgacctctagatgttgggaaaggtgagaagtcgcc 564
Query: 365 tcttctatagcttccagaagtcctgctagctcctcattttggctgtagctaggcagcata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttctatagcttccagaagtcctgctagctcctcattttggctgtagctaggcagcata 624
Query: 425 acccagttgagttttttttttaagcctcccttttcagaaatgtttgttccaacaatggta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acccagttgagttttttttttaagcctcccttttcagaaatgtttgttccaacaatggta 684
Query: 485 ggagtcaggacacctcccttccaatctcaatggctgtttattctctctaaactcctgctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggagtcaggacacctcccttccaatctcaatggctgtttattctctctaaactcctgctc 744
Query: 545 agaacatttgagtttctcactcaatatgtaagtccagctgtc 586
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaacatttgagtttctcactcaatatgtaagtccagctgtc 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_o08.g1 MSMg01no493_o08.g1 CHROMAT_FILE:
MSMg01no493_o08.g1 PHD_FILE: MSMg01no493_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:36 2005
(489 letters)
>mm_chr7_71144586_71145472
Length = 887
Score = 857 bits (443), Expect = 0.0
Identities = 477/489 (97%), Gaps = 3/489 (0%)
Strand = Plus / Minus
Query: 1 tgagttcaaggccagcctggtctacaaagtgagttccaggacagccagggctatacagag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tgagttcaaggccggcctggtctacaaagtgagttccaggacagccagggctatacagag 711
Query: 61 aaaccctatcttgaaaaaaaaaaatgtttgtgccaggaaagcagttattctctagctggc 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaaccctatcttg-aaaaaaaaaatgtttgtgccaggaaagcagttattctctagctggc 652
Query: 121 catggtgagggtcacaggtctcccctagctctgaagaaggttgaaagagcagagagtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 catggtgagggtcacaggtctcccctagctctgaagaaggttgaaagagcagagagtcaa 592
Query: 181 gctcccagaaactgggactatttggtcatcatgtctgtgagcagaatgttgatatattac 240
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 591 gctcccagacactgggactatttggtcatcatgtc--tgagcagaatgttgatatattac 534
Query: 241 cacaggtagactaagcagggactaacagaaaacagaagattcttggacctggagatactg 300
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cacaggtagacaaaacagggactaacagaaaacagaagattcttggacctggagatactg 474
Query: 301 ttggggcaacccatttgattgacggcaccatgaagtacatgggaacccctgtaccccaag 360
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 473 ttggggcaacccattgggttgacgacaccatgaagtacatgggaacccctgtaccccaag 414
Query: 361 ggaggagtgtgctcacttctgggtgtgagatccaggccagttctgacaggagtgctctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggaggagtgtgctcacttctgggtgtgagatccaggccagttctgacaggagtgctctgg 354
Query: 421 gggaccttcgacagtgtcactagggctctatagggtcaagcagattctgccttactcctt 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 353 gggaccttcgacagcgtcactagggctctatagggtcaagcagattctgccttactccgt 294
Query: 481 tgtttgttc 489
|||||||||
Sbjct: 293 tgtttgttc 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 887
Length adjustment: 10
Effective length of query: 479
Effective length of database: 877
Effective search space: 420083
Effective search space used: 420083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
