BAC Information

Click to search

BAC

Clone NameMSMg01-493P14
Chromosome7 (Build37)
Map Location 34,950,071 - 34,950,740
singlet/doubletsinglet
Overlap geneSae2
Upstream geneEG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip
Downstream geneLOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493P14.T7 (MSMg01no493_p14.b1)MSMg01-493P14.TJ (MSMg01no493_p14.g1)
ACCAG571364AG571365
length738734
length of high quality
(start - end)		670 (67 - 736)583 (76 - 658)
definitionCHROMAT_FILE: MSMg01no493_p14.b1 PHD_FILE: MSMg01no493_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:42 2005CHROMAT_FILE: MSMg01no493_p14.g1 PHD_FILE: MSMg01no493_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCCCTGATTTTTTGCATTGATCATGGCTAAATAAACAAAAAAAAATTA
GCCATCCTTAATGCATTTTTGAGGTTACCTTTGACTTAAGTGCTGTTCTT
CCCGTAATGTTTAAATGCAGTTGTTATCTGGTCAACAATTGGGTGTGAGT
TGTCCAGGAAAGCACTGGCTGCAGGTAAGCTCTGGGTTAAGCACAGTGAA
GACAGCGGTGTTGCTCAGAAATTGGGATTTACCTCCCTTTCTTTATTTGT
AGATTGATCTGGACACTATCGATGTCAGCAACCTCAACAGGCAGTTCTTG
TTTCAAAAGAAACATGTGGGAAGATCAAAGGCTCAGGTAACTTCCCCATA
CTGCAGTTAGGACACTTGACCAAGGTTTCACTTAACAGAGGGAGAGAGTG
GGTGAGGCTAGCTCTTTTTATTTTTATTTCTATGATTAACATTTCATTTA
CTTATTATGGTGCACTTGTGCACATCATTTGCATGGGAATGGAAGTCGGA
GGACAACTGGTCTCACCCTCTCCTCCCACCCTTTGGGTTCTGGGGATTGA
CCAGGCGCCTGAACCTTCACCACACAAGCCTACCTCTTGAATCCCAAAGA
GTGAAAAGAATAAGGGAGTGACTCAGGTCACTGGCTATCTGGAAGGAACA
AATTGGGATGTCTTTCATATCCTCTTCATATTTAAGTT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTGTGTCCTCCAATCTCTCAACA
GGATCAATAGGACGATAGACACATGCTAACAAGTCTGGCTTTCCATGGGT
TCTGGGAGTAGAACTCAGGTCCCCAATAACACACAGGAGCACTCTACCCA
TTGAACCTTCTTTCCAGCCTTTTGGTCTTTTTACTTTTCTTGGGCATCAA
CTCCTATCTCTTTCCCCATTTTAGTGGGTTATTATTATTATTATTATTAT
TATTATTATTATTATTTATTATTATTATTACTATTATTATTAAGTTGTGG
GTTTCTTTTAGAGAATTATTTATTTATTTATGAATATGAGTACACTGTTT
CTGTCTTCAGACATACCTGAAGAGGTTCACAGATGTTTTTGAGCCACCAT
GTGGTTGCTGGGAACTCCACTTGGGACCTCTGGAAGGACAGTCAGTGCTC
TTAACCTCTGAGCCATCTCTCCAGCCCCTTGGTTTTGTTTTTGAACCAGG
GTCTCAGTGTGTGGCCCTGGCTGTCTTGGAACCTGCTGTAATGGCCAGGC
GGTGACAAATAGTGATCATCACTAGCAAACCAAGAGAATCTGAAAAGCAC
ACCCATGTCATCGTGGAGTTACTCCCCTGTTATTACTGGACACAAGGAGC
CCACAGTCCTGTGAGAAAGCCCACAGACAACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_p14.b1 MSMg01no493_p14.b1 CHROMAT_FILE:
MSMg01no493_p14.b1 PHD_FILE: MSMg01no493_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:42 2005
         (670 letters)



>mm_chr7_34950068_34951137
          Length = 1070

 Score = 1259 bits (651), Expect = 0.0
 Identities = 666/671 (99%), Gaps = 2/671 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgatcatggctaaataaacaaaaaaaaattagccatccttaatgcatttttgaggtt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cattgatcatggttaaataaacaaaaaaaaattagccatccttaatgcatttttgaggtt 614

                                                                       
Query: 61  acctttgacttaagtgctgttcttcccgtaatgtttaaatgcagttgttatctggtcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acctttgacttaagtgctgttcttcccgtaatgtttaaatgcagttgttatctggtcaac 554

                                                                       
Query: 121 aattgggtgtgagttgtccaggaaagcactggctgcaggtaagctctgggttaagcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aattgggtgtgagttgtccaggaaagcactggctgcaggtaagctctgggttaagcacag 494

                                                                       
Query: 181 tgaagacagcggtgttgctcagaaattgggatttacctccctttctttatttgtagattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgaagacagcggtgttgctcagaaattgggatttacctccctttctttatttgtagattg 434

                                                                       
Query: 241 atctggacactatcgatgtcagcaacctcaacaggcagttcttgtttcaaaagaaacatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atctggacactatcgatgtcagcaacctcaacaggcagttcttgtttcaaaagaaacatg 374

                                                                       
Query: 301 tgggaagatcaaaggctcaggtaacttccccatactgcagttaggacacttgaccaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgggaagatcaaaggctcaggtaacttccccatactgcagttaggacacttgaccaaggt 314

                                                                       
Query: 361 ttcacttaacagagggagagagtgggtgaggctagctctttttatttttatttctatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcacttaacagagggagagagtgggtgaggctagctctttttatttttatttctatgat 254

                                                                       
Query: 421 taacatttcatttacttattatggtgcacttgtgcacatcatttgcatgggaatggaagt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 253 taacatttcatttacttattatggggcacttgtgcacatcatttgcatgggaatggaagt 194

                                                                       
Query: 481 c-ggaggacaactggtctcaccctctcctcccaccctttgggttctggggattgaccagg 539
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctgg-ggacaactggtctcaccctctcctcccaccctttgggttctggggattgaccagg 135

                                                                       
Query: 540 cgcctgaaccttcaccacacaagcctacctcttgaatcccaaagagtgaaaagaataagg 599
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 cccctgaaccttcaccacacaagcctacctcttgaatcccaaagagtgaaaagaataagg 75

                                                                       
Query: 600 gagtgactcaggtcactggctatctggaaggaacaaattgggatgtctttcatatcctct 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gagtgactcaggtcactggctatctggaaggaacaaattgggatgtctttcatatcctct 15

                      
Query: 660 tcatatttaag 670
           |||||||||||
Sbjct: 14  tcatatttaag 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |