Query= MSMg01no496_a23.b1 MSMg01no496_a23.b1 CHROMAT_FILE:
MSMg01no496_a23.b1 PHD_FILE: MSMg01no496_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:16 2005
(653 letters)
>mm_chr7_123922477_123923529
Length = 1053
Score = 1158 bits (599), Expect = 0.0
Identities = 638/653 (97%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 1 tgaaaggtcctacatataaggggtgtgtggaaattcaaaaccttgggctagagtgagttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tgaaaggtcctacatataaggggtgtgtggaaattcaaaaccttgggctagagtgaattg 260
Query: 61 cagctgttagactgcttgtctagcacggaccatgcaccacgttcattcccagcactgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctgttagactgcttgtctagcacggaccatgcaccacgttcattcccagcactgcct 320
Query: 121 taaacaggccattgtggtgcacacctgcaacaccagcacttgggaggtaggggcaggtgg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 taaacaggccattgtggtgcacacctgcaacaccagcacttgggtggtaggggcaggtgg 380
Query: 181 attaggagttcaagatcatcttcagctataaagtgagtttgtggtcagcctgtaatatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaggagttcaagatcatcttcagctataaagtgagtttgtggtcagcctgtaatatgt 440
Query: 241 aggatactgtctttaaaaaaaatgtagctgcatctttgaagagaattgataactcacatg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatactgtctttaaaaaaa-tgtagctgcatctttgaagagaattgataactcacatg 499
Query: 301 ccctgtcttctctgctttgataccacagagaagagacagtcagcaatacacttcagcagt 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 ccctgtcttctctgctttgataccatagagaagagacagtcagcaatacacttcagcagt 559
Query: 361 ataagtctagaaagtcttccaggcctgtaagaagacaatttgacatgagcactcatgaag 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ataagtctagaaagtct----ggcctgtaagaagacaatttgacatgagcactcatgaag 615
Query: 421 ggatgcagggaagttgaagttggttgggtggaagggcagggatgatagagggaaccactc 480
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggatgcagggaagtggaggttggttgggtggaagggcagggatgatagagggaaccactc 675
Query: 481 taggaagagatgttacacatgacaagagcctgaggtgacctcgaggggcagacagcaagt 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 676 taggaagagatgttacacatgacaagagcctgaggtgaccttgaggggcagacagcaagt 735
Query: 541 ctggctcgctggagggcagagaaacagctgtgcctgggggacgttctaagataagacagg 600
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 736 ctggcttgctggagggcagagaaaaagctgtgcctgggggaagttctaagataagacagg 795
Query: 601 gaggagcaggatttttgaattttatcccaaggataccaacctgccatctgaaa 653
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaggagcaggaattttgaattttatcccaaggataccaacctgccatctgaaa 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_a23.g1 MSMg01no496_a23.g1 CHROMAT_FILE:
MSMg01no496_a23.g1 PHD_FILE: MSMg01no496_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:16 2005
(606 letters)
>mm_chr7_124049262_124050265
Length = 1004
Score = 967 bits (500), Expect = 0.0
Identities = 582/618 (94%), Gaps = 29/618 (4%)
Strand = Plus / Minus
Query: 1 cagagctatacagagaaaccctgtctagaaaacccaaaaaaagaaaaagaaaaagaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 990 cagagctatacagagaaaccctgtctagaaaacccaaaaaaagaaaaagaaaaag--aaa 933
Query: 61 aagaaaaaga-aaa-agaaaaagaaa---aaaga-aaa-agaa----aaaga-aaa-aga 107
|||||||||| ||| ||||| ||||| ||||| ||| |||| ||||| ||| |||
Sbjct: 932 aagaaaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagaga 873
Query: 108 a----aaaga-aaa-agaa----aaaga-aaa-agaaaaagaaaaagaaaaagaaaaaga 155
| ||||| ||| |||| ||||| ||| ||||| ||||| |||||||||||||||
Sbjct: 872 aagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaaaagaaaaaga 813
Query: 156 aaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaaga 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaaga 753
Query: 216 aaaagaaagccttgacctttgtcctttcttgttgtccacacaggtctgggccaaagtgat 275
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 752 aaaagaaagccttgacctttgtcctttcaggttgtccacacaggtctgggccaaagtgat 693
Query: 276 gcctatcagactgacacaagctactctctgaccttttaaggaaatgttggtcaggtcttt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gcctatcagactgacacaagctactctctgaccttttaaggaaatgttggtcaggtcttt 633
Query: 336 cccaccagaaagcacctgctttttcatctttaatatttgctagatctcactgtatgatgc 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cccaccagaaagcacctgctttttcatctttaatatttgctagatctcactgtatgatgt 573
Query: 396 atattttatccctcttcatgctttaggagcttgactctaaggattatgaattacaaacat 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atattttatccctcttcatgctttaggagcttgactctaaggattatgaattacaaacat 513
Query: 456 cacactggatatccttaaaagcttaacatccaacatataatttcatttttctggtgtgtg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacactggatatccttaaaagcttaacatccaacatataatttcatttttctggtgtgtg 453
Query: 516 tgtatacatgtatacttgtgttatgtacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 575
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtat--atgcatacttgtgttatgtacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 395
Query: 576 gtgtgtgtgtgtgtgtgt 593
||||||||||||||||||
Sbjct: 394 gtgtgtgtgtgtgtgtgt 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 238
Number of extensions: 80
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
