BAC Information

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BAC

Clone NameMSMg01-496F11
Chromosome7 (Build37)
Map Location 117,737,759 - 117,738,111
singlet/doubletsinglet
Overlap geneSbf2
Upstream geneSt5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, LOC668246
Downstream geneAdm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496F11.T7 (MSMg01no496_f11.b1)MSMg01-496F11.TJ (MSMg01no496_f11.g1)
ACCAG573170AG573171
length807787
length of high quality
(start - end)
242 (74 - 315)600 (80 - 679)
definitionCHROMAT_FILE: MSMg01no496_f11.b1 PHD_FILE: MSMg01no496_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:38 2005CHROMAT_FILE: MSMg01no496_f11.g1 PHD_FILE: MSMg01no496_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGGCTGCCCCTGGTATATACACTAAGTTCTAGTGCAATCAGA
GTTAAGTGCACTTTTGAGTTCACCGCAGTGGGCTGAGCAAGCCCAAGTCA
GACCAAATCGTTGCATTCAATTCTACTTCTAGCTATGAAGCTACTGGCAA
CTGTTAGCTGCTGAGAAAGAGACAGTTTTCTCTGTTAAGTGTAGCCCTAG
TAAGTCCACCATCCTCTAGTGGAAGACCGAACATCCAAGATTATTTGGGC
AGCACAAATTGGTCTTTATCTTTCTAATTAATTAATTAATTTTAAAGAAC
ACAAAATTGGATGGTTAGGGTGGGTTGGGGAGGGGATATGATCAAAACAT
GAATGAAACTCTCACAGAACTGATAATTTTTTTAAGCACTGAAGAATAAC
TATAGAACATATTAAAAGATTAGAAAGATATTATCAATTTGTATTGTCAA
GAATATTAACAAAGTTTCTGAAAGAATGATTTCCATAATGTTTTTGGTTA
AAATATGGTCACTAATATCTTGGTTTTTGATGGCTCCGCACGCCTTTTAA
TCTTAGCACCTTGTAGAAGTCTGTTTCTATTACACATTTTTTTAATATTT
GAAGACATTCTCGCCTTCCATATGCAGGGCTGCCTCTTTTTATTTTCCCG
TCATTTTATATTTTATCACAACTCGAGGGTCTCTTATTATTATTTCCACA
CCATACATTTTATTGAGCCTTTGTTGTTCTTTTACATCTTTTAATTCTAC
ACTTATT
NCCCGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACAAAGGCATGTTTGCAG
GACATGTCTTCACAAATGGAATTTTAACTGACTTGTTTTTGTGACCATGT
TTTCCTGTCTTTTTCTGAAATGTTTACATTTCAAATATTTATAAGCATTT
CCTCCATAGAGCTGGACAGATTTTTAAAAAAGATTTATTTATTTATTTAT
TTATTATATGTAAGTACACTGTTGCTGTCTTCAGACACTCCAGAAGAGGG
AGTCAGATCTTGTTGGTTGTTATCCACCATGTGGTTGCTGGGATTTGAAC
TCTGGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTC
ACCAGCCCCAGATTTATTTTTTAATTCATTGTTTAAAAAAGATTTTATTT
TTTTAAATGTATGTGAGTACACTGTCGCTGTCCTCAGACATACCAGAAGA
GGGCATCAGATCTTATTACATATGTTTGTGAGTCACTATATGGTTGTTGG
TAATTGAACACAGGACCTCTGGAAGAGCAGTTAGTGCTCTTAACCACTGA
GCCATCTCTCTAGCCCTTTAATTCATTTTGAATCGACACATAAAAATTAC
ATTTATCAAGTACAATATGATATTCTGAAATGTGTCATGTTGTAGAATGG
CTAAATCATGATGCTTAACTATATATTACTTCACTTACCTTTTTTTTTTG
GTGGTGAGGACACTTAAATCTATCATTTCAATGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_f11.g1 MSMg01no496_f11.g1 CHROMAT_FILE:
MSMg01no496_f11.g1 PHD_FILE: MSMg01no496_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:38 2005
         (600 letters)



>mm_chr7_117737759_117738758
          Length = 1000

 Score =  659 bits (341), Expect = 0.0
 Identities = 350/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgacaaaggcatgtttgcaggacatgtcttcacaaatggaattttaactgacttgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atgacaaaggcatgtttgcaggacatgtcttcacaaatggaattttaactgacttgtttt 294

                                                                       
Query: 61  tgtgaccatgttttcctgtctttttctgaaatgtttacatttcaaatatttataagcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgtgaccatgttttcctgtctttttctgaaatgtttacatttcaaatatttataagcatt 234

                                                                       
Query: 121 tcctccatagagctggacagatttttaaaaaagatttatttatttatttatttattatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tcctccatagagctggacagatttttaaaaaagatttatttatttatttatttattatat 174

                                                                       
Query: 181 gtaagtacactgttgctgtcttcagacactccagaagagggagtcagatcttgttggttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gtaagtacactgttgctgtcttcagacactccagaagagggagtcagatcttgttggttg 114

                                                                       
Query: 241 ttatccaccatgtggttgctgggatttgaactctggaccttcggaagagcagtcaggtgc 300
           | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 113 tgagccaccatgtggttgctgggatttgaacactggaccttcggaagagcagtcaggtgc 54

                                                                
Query: 301 tcttacccactgagccatctcaccagccccagatttattttttaattcattgt 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  tcttacccactgagccatctcaccagccccagatttattttttaattcattgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)