BAC Information

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BAC

Clone NameMSMg01-496K12
Chromosome7 (Build37)
Map Location 37,145,210 - 37,145,568
singlet/doubletsinglet
Overlap genenone
Upstream geneRhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496K12.T7 (MSMg01no496_k12.b1)MSMg01-496K12.TJ (MSMg01no496_k12.g1)
ACCAG573410AG573411
length1,583753
length of high quality
(start - end)
---360 (329 - 688)
definitionCHROMAT_FILE: MSMg01no496_k12.b1 PHD_FILE: MSMg01no496_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:03 2005CHROMAT_FILE: MSMg01no496_k12.g1 PHD_FILE: MSMg01no496_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATATCTCANNNTTTACAAGTGAGTGAGTAGGTCCGCGTTCTCTTGTNN
NGAAGGGGGAGCTATTCTTCTCTCCGATAGGAAGGAGGATGGGCTCGCGC
GGGGAATAGTTCCTATCGCGGTATTGTACTTCTCACTGAAGAAGAGGTGG
GCGCGAGCGTGCGCAGCCGCACATATTGCACGCCTCGTTATATGTCTTGT
AGGCTGTCGACGCCGCTAAGCTATGATACGTCATACATTCATATCTCATA
TAGGTGANTAGCCACGGCGAGCCAACGTCGCACGCGTCTATATATGGTAA
GCGATGCGCGGTGCGAGACGCGCAATTCGCGCGTCGTCGTCATCTTTATC
GTATAGGTAGTACACCACATAATATGATTACNACCGTCTTCTGCGCATAG
CCTCATACGCCTCCTCCTCTGCTATGTCGACGTTATCTCGGCTATGTAGA
CAGTTCCGGCGCATAGCACGCGAAATCACACGATCAGGATAGGGATAACN
AATAGCTATTAACATACATATTTGTCAGATCACTATCAAGACTACTGACA
TAATCGCATAATACTACCGATATAACTTCGATCATTTTACAAAATGTTGG
TGCAATGAAATACGATAGCGGTCAGCTGTCACATATCTGTTATATTTTGT
TTGCGCGTGCCGTCCCGTATAGTATAAGAGNCTGATTAACATACTTATCG
GTAGTATGAATGCTACGCGCCGCCCGCGGGAATATAATGTACGCCGCGCG
ACCGTAGGACGGTGCTATGTATCGCGTTATTTGCCGCGCGCCCTATATAG
TCTGCGAGCATTGCTGGCACGTCACAGACGGTGTGCATAGACAACCCCGT
GTGAGTAGCGGAGTCGTAGTGATCAAGTCAGCTGTATTTCGCCACGTTCC
GCGTCACGCTGTGTATATATCACGGTTTTGTGTTGATGTATTCTTCCGTA
CGACGGAGTATACACTGCTGATGTCGTCCTTATAATCACACAGACACCCT
CACACGGCGCGTTATAATCACCATCTCTACGATAGTTAGTTACTATACAA
TTAGTATAGAGCTATACTATGTCGGCCATAGAGTTCAGCATGTACCATAT
TAATGTACCCGCTCGGCCGCGANGTCAGATATTCGTCACGAATATCGCAG
TGTGTTTGTAGCGACCGTGCCATGGCGTATATACACTGTGCACGACGATC
GCGCCCGCCGGCACAGTCGCATTATGTTTGGTACGTAGATATAACGATAT
ACGCGACTCATGTACGATTAGATGTACACGCGATATTGTCAAGCACGTAT
AGTAACTCGCGCGACGCGCTCTCGCGTCTATATATATGCTCTGTCTGTAA
TGCTCACAGCGCGTGGCGAGAACCTATAATATTTTCTAACTACTCGATCC
GGTCGGTAGGTTTCGCGCCGCTTATCTGCGTATGACACAAGCTTTGGATT
ACATATTACAATCGCACCGGTCGGAGTGTCTGATTACTAGATGTTTAGAA
TATNTATAGAGAGNGCAATTGCGCTCTGGACANGATACAGTGTAGAATCT
AGTGTACGCTAGTGTATGCTGTCCGCGCAGGCG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACCCAAAACAATCAGAGAAAGAGTGAAACTCTCGA
TGTACTGGAATTTTAGAACCCACTGTAACTCTGTCCTAACTTCACAGGGA
AGGAGGGATAGCTGATAAATCTATACCACATGCAGACCTGTTCCCTTTGA
AGGTGCTGAGGGTAGGAACCTTCAATGTATAGGCTCTTGCCACTGACTAC
CATACTTCGGACACAAACTTTACAAGTATCCATTTTCTTATCTATAAGAA
GCAGTGATCATAGCTCATTTTTCTATTAACTAAGTCCTACTGAGAAACCT
GGCAGAAGTATTTTGTACTGAAAGGAAGAATAAACATATGCAATAGGCAA
CAGGGTAAAATAAAAATGCTTGGACAGATGTGAACAAAGGGAAACTGAAA
CTAATTACTGATAATATCGATTAAAATGTTTCCTCCATAGATTTCCCTGG
GAGGGGGACATAGACTTTATGGGTGGACTGGGGGCAGGGCAGGGCAGGAA
CAAGAGGATCAGGGAGGGAAGGGAGAGAGGATATAAAGCCGAGGGAGGGA
ATTCTGGGAGAGACAGCTGGAACTGAGAGCATTTGAAGGGTGATATGGAA
ACCTAAGGCACTGGCAACTTCCTAAAATATGTGAAGGTAATCTTAATAAG
GGCTTCTAATAATGGGGGATAAGGAGTCCCAACAAGCTATCTCTTATCAC
CAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_k12.g1 MSMg01no496_k12.g1 CHROMAT_FILE:
MSMg01no496_k12.g1 PHD_FILE: MSMg01no496_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:04 2005
         (360 letters)



>mm_chr7_37145010_37145769
          Length = 760

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%), Gaps = 1/360 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagtcctactgagaaacctggcagaagtattttgtactgaaaggaagaataaacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagtcctactgagaaacctggcagaagtattttgtactgaaaggaagaataaacata 260

                                                                       
Query: 61  tgcaataggcaacagggtaaaataaaaatgcttggacagatgtgaacaaagggaaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaataggcaacagggtaaaataaaaatgcttggacagatgtgaacaaagggaaactga 320

                                                                       
Query: 121 aactaattactgataatatcgattaaaatgtttcctccatagatttccctgggaggggga 180
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataattactgataagatcgattaaaatgtttcctccatagatttccctgggaggggga 380

                                                                       
Query: 181 catagactttatgggtggactgggggcagggcagggcaggaacaagaggatcagggaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagactttatgggtggactgggggcagggcagggcaggaacaagaggatcagggaggg 440

                                                                       
Query: 241 aagggagagaggatataaagccgagggagggaattctgggagagacagctggaactgaga 300
           | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 441 a-gggagagaggatataaagtcaagggagggaattctgggagagacagctggaactgaga 499

                                                                       
Query: 301 gcatttgaagggtgatatggaaacctaaggcactggcaacttcctaaaatatgtgaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcatttgaagggtgatatggaaacctaaggcactggcaacttcctaaaatatgtgaaggt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)