BAC Information

Click to search

BAC

Clone NameMSMg01-496L17
Chromosome7 (Build37)
Map Location 80,857,293 - 80,857,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061
Downstream geneA830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496L17.T7 (MSMg01no496_l17.b1)MSMg01-496L17.TJ (MSMg01no496_l17.g1)
ACCAG573468AG573469
length7601,298
length of high quality
(start - end)		600 (72 - 671)---
definitionCHROMAT_FILE: MSMg01no496_l17.b1 PHD_FILE: MSMg01no496_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:10 2005CHROMAT_FILE: MSMg01no496_l17.g1 PHD_FILE: MSMg01no496_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCTCCAGTTCTTGCCTCCAAGACAAACATTGAAAGGAGAGGTAGGG
GACTTCAACACTTTAATGTTGACAACAGCTAGATTTGGGATAACTACTTG
GAAAGACCACAATTAAGAGGTAAAGAGCAACAAACACAGTGCCCAGAGGC
AGAAGTTCTCAACCTGGTTGCCTATTAGAGTCACCAGGGGAGCTATTTAA
GTGTGCTGATGCACAGCTCTATCAGGGAAGATTTGAATTAATTGGTCTGG
TGTTGGGCACCAGGGTTTGTAAAAGCTCCCCAGGGGATTCTAATGTGTAA
CCTAGGTGGTCCACTCCTGCCCAAGAGATGCCTTTTCTGTGGTATAATTA
CATTTAAGAGACCTAAATTAATTTATTTATGGAAGACAGAGGAGAGAAGG
GACCCAACCTCAATTGAATGTTCTGTGCTAAGTGTATAGATGTAAAATTC
ATTGAAAGCTGGTTAGATGCCAAGCCTTATCTTAACTACTGTCCCCGTGT
TTGCTCTCCACGGTGGCTCTTCTCAACTGATTTGCTTCCATTCTATAAAG
GAGGAAACAGAGGGTTACTGACAGCCAGATGCTTACCTTGAATTAGTTAG
ATGATAAATAAATAAATAAATAAATGCATAAGTGAAGGTTGCCCAGGATC
ACAGAGCTGGGGGGATAGGCTGTGAATCATGACCCCAGCCCTCCTGTGGC
AGCAGCATCA

TAACAACAACACATAGCGCCCGGCCGCGTTTTGGTTGAATGGGCCCTTTC
TCTCTTACTAATAATATATAAACTAGAATGTTTCGNTCCGTTTTCTCCTT
CCCGTAGCGCCGCGCACATGCCGTGTCGCTCGGTTGCCCGTACATGTGTT
GGGGTCGGTTCGTTCGTCTATACGGAAGAGCATTACAGTAGTGACGTTGC
CACTATTATATCCTCGACGTCGCACGATCTATTATTGAGTGTGGGCACTA
CATTTGTGTCGCCGCTAAATTGTATGCTCGGTGTCTCTCTATCGGTCATA
ATCGCCGGGCGTGTGTTTTGTTTCGTATACTACACCTACTGCGTCACTCG
TGCTATATAAGGATGGATTTATCCTTTTTATGAACAACTACGGCAAACAC
ACATCGCCTAGATGCGGCCGGTTCACTATGTACTCTCCCCTCCCCTGAGA
TATAAACACGCTCGGTCGGTGTTTATCCATACGCGCGCGCCACGACATTA
TTGCCTCGAGAACTGCTCGTCATTACGATGTGTGTTGTCCGGGACACCTA
TGGTAGATACGACACGCCCTGCCCGCCCCGGTAACCCTCCTCTATTTGTT
TCCTCCCCACCACCCCGCACACAACGCATACTTATAATAATATTATAACG
CTATCACCAATGTTTGTCCTCACTATTTATGCAAGTATATTTCTTGGGGC
AACCAGCGCCTTTAGCAACGTGATAATATACCGTATGCGCGCGCGTATGA
CGGCGTCGTACCTCCCCCGGCTTTTAATAGTGTGCGACAGAGAGAAAATC
TTGTCTCTTTCTATTACACTCTGCACAAACCGTCATACCCACATGTCAAA
TTATACTTCACGCCACGTCGATTCAATTCCATCCCCTCTCTACGCTCGAT
ATATTATGTGACTAACACACTACCCCCACACTCACTTCATATACAATATA
CATTTNGCGGGGGTTCTACANCACTTAGGCAATATAATTCGANTCACATC
ATCGACGCGCGCCACGTATTATTATAATGACGACTTACTATACGCAACGC
TACAATATNGTGCCACATACGCAATCTTNTAATACACAATCGCAGATCCT
CCGCAATTATTATACAAGACCCCAATGCCGAACGTTTCATTATCAGTGTA
ATGGATGTAANACTTACCGCAATCTAAACATATTCATATACTTATTACGC
AGAATTAATGCGCACCGCGAATAGTACGTAAATACCACCTAGCACTAGCA
CGATTATAGTATCATTATAGATCCCACTATCAACTACACATACACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_l17.b1 MSMg01no496_l17.b1 CHROMAT_FILE:
MSMg01no496_l17.b1 PHD_FILE: MSMg01no496_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:10 2005
         (600 letters)



>mm_chr7_80857093_80858092
          Length = 1000

 Score = 1145 bits (592), Expect = 0.0
 Identities = 598/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacaaacattgaaaggagaggtaggggacttcaacactttaatgttgacaacagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacaaacattgaaaggagaggtaggggacttcaacactttaatgttgacaacagcta 260

                                                                       
Query: 61  gatttgggataactacttggaaagaccacaattaagaggtaaagagcaacaaacacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgggataactacttggaaagaccacaattaagaggtaaagagcaacaaacacagtg 320

                                                                       
Query: 121 cccagaggcagaagttctcaacctggttgcctattagagtcaccaggggagctatttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagaggcagaagttctcaacctggttgcctattagagtcaccaggggagctatttaag 380

                                                                       
Query: 181 tgtgctgatgcacagctctatcagggaagatttgaattaattggtctggtgttgggcacc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgctgatgcacagctccatcagggaagatttgaattaattggtctggtgttgggcacc 440

                                                                       
Query: 241 agggtttgtaaaagctccccaggggattctaatgtgtaacctaggtggtccactcctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtttgtaaaagctccccaggggattctaatgtgtaacctaggtggtccactcctgcc 500

                                                                       
Query: 301 caagagatgccttttctgtggtataattacatttaagagacctaaattaatttatttatg 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagagatgctttttctgtggtataattacatttaagagacctaaattaatttatttatg 560

                                                                       
Query: 361 gaagacagaggagagaagggacccaacctcaattgaatgttctgtgctaagtgtatagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagacagaggagagaagggacccaacctcaattgaatgttctgtgctaagtgtatagat 620

                                                                       
Query: 421 gtaaaattcattgaaagctggttagatgccaagccttatcttaactactgtccccgtgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaaaattcattgaaagctggttagatgccaagccttatcttaactactgtccccgtgtt 680

                                                                       
Query: 481 tgctctccacggtggctcttctcaactgatttgcttccattctataaaggaggaaacaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctctccacggtggctcttctcaactgatttgcttccattctataaaggaggaaacaga 740

                                                                       
Query: 541 gggttactgacagccagatgcttaccttgaattagttagatgataaataaataaataaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggttactgacagccagatgcttaccttgaattagttagatgataaataaataaataaat 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |