BAC Information

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BAC

Clone NameMSMg01-496N21
Chromosome7 (Build37)
Map Location 116,226,356 - 116,399,293
singlet/doubletdoublet
Overlap geneRic3, Lmo1
Upstream geneLOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub
Downstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496N21.T7 (MSMg01no496_n21.b1)MSMg01-496N21.TJ (MSMg01no496_n21.g1)
ACCAG573571AG573572
length750758
length of high quality
(start - end)		645 (54 - 698)577 (85 - 661)
definitionCHROMAT_FILE: MSMg01no496_n21.b1 PHD_FILE: MSMg01no496_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:21 2005CHROMAT_FILE: MSMg01no496_n21.g1 PHD_FILE: MSMg01no496_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,226,356 - 116,226,997)(116,398,741 - 116,399,293)
sequence
NNNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTAATCAAAAAAGTTGGCCTTGGACTTAGTGATCCT
CCTGACTCTAGAATGATAAAATTATAGGCGTGCACCACCCCAGATCAAGT
TGTACTCTAAGAGGCAACAAGAGGCTGAACAAGTGAACGCCCAAAACCAT
GATAAAGCTCCACTACCAACTAAGATTCCTACAGATACATGGTAGAAAGG
GGAAACCTACTAACTCTAAGTTCAGGCACAGGTGACAAGACGACACGCAA
GTCACTGAGGGGAAGAGTGGGGGCCGGGGAGGCCACGACCGCCTGCGAGC
TCCGAGGCTGCCCAGTCGGCGCTCACCTTCTGGGCCCGGCGGCGGCTCCG
GTCGCTTCCCGCGAGACAAGAAGGCCTTGGGCAGCAGCAGCGACACGGCC
AGGACGAGCCCCGAGGCCAGCGCCACTCTCTGCACCGTGGAGTACGCCAT
GGCTGCGTACCGCAGGACCCAGGAGTCCGAACCGGAACCGGAACCGCAGC
GCGCAATCCGGCTCACACTCGACCGGCGAGCTGCACGGACGGCGGCGCGC
GAGGGACAAGACGAGAGCGCCCTCCACTCTGTCAAAGTGCCCCAGGGCGG
TGCGGTTGTAAGCCAACAGCAAAGCTTCTATCTCCTAGCTCGCTTGCGTT
CAGCTGTCACCCANGTCCGGGCATCCAGCACCTAAACCTGGCAAGTTTGG


NNNNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAACAGAGGACGG
GAAACTTGAAGAGCTGTAATTACTTGGAGCAGAGTTCATCTCAGAACTTG
GGAGCCGATGAGTCTGATGACAGCCCTGATCTGAGGAGGGAAGGGAGGAA
GCTTAGCTTCTGGGACTTGTCCCCGGCCTCTAGGGGTCAGCGTAGAGCCA
CTTTTCTGTGGTACTGGTGCCACCCAGCTATATGGGCCCCTCCCCACCCA
GGGGCAGTTTCCTCTGCCTCATCTGCTAACCTTGCCAGACTCCTGTTCAA
TTCCCCAGGGTTCCCCTAGCACAGTGGGTCAAGCCAGGCATTTCCAGAAC
GACTCAAAAGAACGCACACAGAGAAATCCTGTCTCGAAAAACAACAACAA
AACAAAACAAAACGAGCACACACGAACATTTTTTTTTTAAAAAACAGGGT
GCCTAGCAAGAACGCTAATGGGGCTGCACAATTTCTGAGGTGTGTCACCT
AAACCTTCCAGCCATTCTTCGTGTGGCTTGATGTCATCTAGAAATGTGTT
GGCATGCCGGTGACTTCCCTGGGATGCTTACACCCTGTAGTCTACAGATT
GGACAGGCCTGCTAGAGAACTGTGCCCCCCCCCTTCTGCTTTGAACCTAC
CTTCTCATCTCTCGCATGCNACCCTCCAGCAGCAGCTACTCTGTCTGCAC
TCAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_n21.b1 MSMg01no496_n21.b1 CHROMAT_FILE:
MSMg01no496_n21.b1 PHD_FILE: MSMg01no496_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:21 2005
         (645 letters)



>mm_chr7_116226154_116227197
          Length = 1044

 Score = 1158 bits (599), Expect = 0.0
 Identities = 632/643 (98%), Gaps = 2/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaatcaaaa-aagttggccttggacttagtgatcctcctgactctagaatg 62
           |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcattaagcagaacaagttggccttggacttagtgatcctcctgactctagaatg 262

                                                                       
Query: 63  ataaaattataggcgtgcaccaccccagatcaagttgtactctaagaggcaacaagaggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataaaattataggcgtgcaccaccccagatcaagttgtactctaagaggcaacaagaggc 322

                                                                       
Query: 123 tgaacaagtgaacgcccaaaaccatgataaagctccactaccaactaagattcctacaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaacaagtgaacgcccaaaaccatgataaagctccactaccaactaagattcctacaga 382

                                                                       
Query: 183 tacatggtagaaaggggaaacctactaactctaagttcaggcacaggtgacaagacgaca 242
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgcatggtagaaaggggaaacctactaactctaagttcaggcacaggtgacaagacgaca 442

                                                                       
Query: 243 cgcaagtcactgaggggaagagtgggggccggggaggccacgaccgcctgcgagctccga 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 cgcaagtcactgaggggaagagtgggggccggggaggccacgaccgcccgcgagctccga 502

                                                                       
Query: 303 ggctgcccagtcggcgctcaccttctgggcccggcggcggctccggtcgcttcccgcgag 362
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 ggctgcccagtcggcgctcaccttccgggcccggcggcggctccggtcgcttcccgcgag 562

                                                                       
Query: 363 acaagaaggccttgggcagcagcagcgacacggccaggacgagccccgaggccagcgcca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acaagaaggccttgggcagcagcagcgacacggccaggacgagccccgaggccagcgcca 622

                                                                       
Query: 423 ctctctgcaccgtggagtacgccatggctgcgtaccgcaggacccaggagtccgaaccgg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctctctgcaccgtggagtacgccatggctgcgtaccgcaggacccaggagtccgaaccgg 682

                                                                       
Query: 483 aaccggaaccgcagcgcgcaatccggctcacactcgaccggcgagctgcacggacggcgg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaccggaaccgcagcgcgcaatccggctcacactcgaccggcgagctgcacggacggcgg 742

                                                                       
Query: 543 cgcgcgagggacaagacgagagcgccctccactctgtcaaagtgccccagggcggtgcgg 602
           |||||||||||||||| ||||||||||||||||||  |||||||| ||||||||||||||
Sbjct: 743 cgcgcgagggacaagatgagagcgccctccactctaccaaagtgctccagggcggtgcgg 802

                                                      
Query: 603 ttgtaagccaacagcaaagcttctatctcctagctcgcttgcg 645
           ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 803 ttgtaagccaacagcaa-gcttctatctcctagctcgcttgcg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no496_n21.g1 MSMg01no496_n21.g1 CHROMAT_FILE:
MSMg01no496_n21.g1 PHD_FILE: MSMg01no496_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:21 2005
         (577 letters)



>mm_chr7_116398741_116399717
          Length = 977

 Score = 1031 bits (533), Expect = 0.0
 Identities = 549/555 (98%), Gaps = 2/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaacagaggacgggaaacttgaagagctgtaattacttggagcagagttcatctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttaaacagaggacgggaaacttgaagagctgtaattacttggagcagagttcatctcag 494

                                                                       
Query: 61  aacttgggagccgatgagtctgatgacagccctgatctgaggagggaagggaggaagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aacttgggagccgatgagtctgatgacagccctgatctgaggagggaagggaggaagctt 434

                                                                       
Query: 121 agcttctgggacttgtccccggcctctaggggtcagcgtagagccacttttctgtggtac 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agcttctgggactcgtccccggcctctaggggtcagcgtagagccacttttctgtggtac 374

                                                                       
Query: 181 tggtgccacccagctatatgggcccctccccacccaggggcagtttcctctgcctcatct 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 373 tggtgccacccagctatatgggcccctccccacccagaggcagtttcctctgcctcatct 314

                                                                       
Query: 241 gctaaccttgccagactcctgttcaattccccagggttcccctagcacagtgggtcaagc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actaaccttgccagactcctgttcaattccccagggttcccctagcacagtgggtcaagc 254

                                                                       
Query: 301 caggcatttccagaacgactcaaaagaacgcacacagagaaatcctgtctcgaaaaacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caggcatttccagaacgactcaaaagaacgcacacagagaaatcctgtctcgaaaaacaa 194

                                                                       
Query: 361 caacaaaacaaaacaaaacgagcacacacgaacattttttttttaaaaaacagggtgcct 420
           ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||
Sbjct: 193 caacaaaacaaaacaaaacgagcacacacgaaca--tttttttaaaaaaacagggtgcct 136

                                                                       
Query: 421 agcaagaacgctaatggggctgcacaatttctgaggtgtgtcacctaaaccttccagcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agcaagaacgctaatggggctgcacaatttctgaggtgtgtcacctaaaccttccagcca 76

                                                                       
Query: 481 ttcttcgtgtggcttgatgtcatctagaaatgtgttggcatgccggtgacttccctggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ttcttcgtgtggcttgatgtcatctagaaatgtgttggcatgccggtgacttccctggga 16

                          
Query: 541 tgcttacaccctgta 555
           |||||||||||||||
Sbjct: 15  tgcttacaccctgta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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