BAC Information

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BAC

Clone NameMSMg01-497O16
Chromosome7 (Build37)
Map Location 148,329,896 - 148,419,585
singlet/doubletdoublet
Overlap genePtdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488
Upstream geneMtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5
Downstream geneIrf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497O16.T7 (MSMg01no497_o16.b1)MSMg01-497O16.TJ (MSMg01no497_o16.g1)
ACCAG574369AG574370
length765764
length of high quality
(start - end)
169 (81 - 249)395 (324 - 718)
definitionCHROMAT_FILE: MSMg01no497_o16.b1 PHD_FILE: MSMg01no497_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:46 2005CHROMAT_FILE: MSMg01no497_o16.g1 PHD_FILE: MSMg01no497_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,419,417 - 148,419,585)(148,329,896 - 148,330,290)
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACCGATGAGGCGC
GGAANTCAAGGCNATTTCTAAAAAGGAGGGCTGGACAATTGGNATCAATA
CAAGGTTACTTAACTCACAGTCAGTTCTACTCCTGTGTGATGAGTACTGT
CCCGATTACAAGGGTTACCTCTCTAGAACACTCTCATTGACAGCCAAAGG
CTATAATGAAATTTAGGAAAAAGTAGGTGCATTGAGCCTGCCACCAGAAG
GTATCCCGAACTCAGTCCAACTGAGCCCTTTGTTTGTATACTGGCTAATT
TTAGGTCAATTTAACACTTTTTATTTTCATTTGGAGAACCTCAACTGAGA
AAACGCTCCCACCAGACAGTTTCGTGGCTAAGCCTGTAAAACATTTTCTT
ACTGATGTCGTGGAAGGGCCCACCTCACTGCTGACAGCGCCACCCTGGGA
CGGTTGTCCTGTTAAGAAAGTAGCAACACTCCTCCATGTCCCTCCTCCAT
GTCCTTTGCATCACTTCCTGCCTTGAGCTCCTGACCTTCCTACCTTAGAT
GATGGACCATGAGTAGGAAGATTGAATAAACTCTTTCCTCCCCAAGTTGC
TTGTGGTCATGTTATATCACATCAACATAAACCCCTAAGACAGGTGATAA
AGGTAGCCATAATGGGTGGGGGCCATGCCAACCACATTAAAGCCTTCCCA
GAACTGCCCATAGGCCAAGGGCAGCCATGAAAGGTTTTCCAGAGTATAAG
TTGTGTTCATCAAGN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGAAAAATGCTCTTGCCTCTTCCTGTGTACTGGGACC
ACAAGTGAGTCCCCCAGTACTGCTGTTTTTTTCTGGGTTTTGTTTCTTTT
TTTGTTTTTGGATTGCTTTGTAAAGTAGGCAGTCTTGAGATTTTTCTTTC
TGTAGCTGTGTACTTACTTGATTGTTTAACCAAGTACTGTCAGATCTTTA
GATGAGGGATTATAGATTAGCCTTCCAGAACGGGGAATGTCTGCCAAGGG
TGAGTTCGTTCTGAAGCTGNGTAACAGATTCCCCCATGGTCCTAAAGCTC
TGAGCAGGCTGTGTGGTTTGTGATTGCTGCTAGATTCCTGAGTGGCCTTC
ACCCTCTGCACCCATCCAGCCTTGACACACTAGGAGTTGAACCAGAGCCA
CAGGGAAGGGAAATAATTTAAAAAGTGCCTACTTCATCTTAGCAGCAAGT
GCTCTTTTTTGTTTTTTTGAGACAAGGGTCTTCTGTGTAGCCTTGGCTGT
CCTAGAACTATCTCTGTAGACCAGACTGGCCTTGAACTCAGAGATCCTCC
TGTGTATCCCCTCAGTGCTGGGATTAAAGGCGTGTGTCATCACTGCCCAG
CTTATTTGTGATTTTATTTCTTTAGATTTATTTATTTTATGTATATGAGT
ACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGACCCCATTA
CAAGTTGTTAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_o16.b1 MSMg01no497_o16.b1 CHROMAT_FILE:
MSMg01no497_o16.b1 PHD_FILE: MSMg01no497_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:46 2005
         (169 letters)



>mm_chr7_148419217_148419785
          Length = 569

 Score =  298 bits (154), Expect = 1e-85
 Identities = 165/169 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggacaattggnatcaatacaaggttacttaactcacagtcagttctactcctgtgtga 60
           |||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 369 ctggacaattgttatcaatacaaggttacataactcacagtcagttctactcctgtatga 310

                                                                       
Query: 61  tgagtactgtcccgattacaagggttacctctctagaacactctcattgacagccaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgagtactgtcccgattacaagggttacctctctagaacactctcattgacagccaaagg 250

                                                            
Query: 121 ctataatgaaatttaggaaaaagtaggtgcattgagcctgccaccagaa 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctataatgaaatttaggaaaaagtaggtgcattgagcctgccaccagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no497_o16.g1 MSMg01no497_o16.g1 CHROMAT_FILE:
MSMg01no497_o16.g1 PHD_FILE: MSMg01no497_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:46 2005
         (395 letters)



>mm_chr7_148329696_148330490
          Length = 795

 Score =  725 bits (375), Expect = 0.0
 Identities = 390/395 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagattcccccatggtcctaaagctctgagcaggctgtgtggtttgtgattgctgctag 60
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acagattcccccatggtcctgaagctctgagcaggctgtgtggtttgttattgctgctag 260

                                                                       
Query: 61  attcctgagtggccttcaccctctgcacccatccagccttgacacactaggagttgaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcctgagtggccttcaccctctgcacccatccagccttgacacactaggagttgaacc 320

                                                                       
Query: 121 agagccacagggaagggaaataatttaaaaagtgcctacttcatcttagcagcaagtgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 agagccacagggaagggaaataatttaaaaagtgcctacttcatcttagcagcaagtgtt 380

                                                                       
Query: 181 cttttttgtttttttgagacaagggtcttctgtgtagccttggctgtcctagaactatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 cttttttgtttttttgagacaagggtcttctgtgtagccttggctgtcctagaactagct 440

                                                                       
Query: 241 ctgtagaccagactggccttgaactcagagatcctcctgtgtatcccctcagtgctggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtagaccagactggccttgaactcagagatcctcctgtgtatcccctcagtgctggga 500

                                                                       
Query: 301 ttaaaggcgtgtgtcatcactgcccagcttatttgtgattttatttctttagatttattt 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaggcgtgtgtcaccactgcccagcttatttgtgattttatttctttagatttattt 560

                                              
Query: 361 attttatgtatatgagtacactgtagctgtcttca 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 attttatgtatatgagtacactgtagctgtcttca 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)