BAC Information

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BAC

Clone NameMSMg01-498L19
Chromosome7 (Build37)
Map Location 93,569,587 - 93,570,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1
Downstream geneOlfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498L19.T7 (MSMg01no498_l19.b1)MSMg01-498L19.TJ (MSMg01no498_l19.g1)
ACCAG574989AG574990
length773779
length of high quality
(start - end)		681 (46 - 726)569 (60 - 628)
definitionCHROMAT_FILE: MSMg01no498_l19.b1 PHD_FILE: MSMg01no498_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:54 2005CHROMAT_FILE: MSMg01no498_l19.g1 PHD_FILE: MSMg01no498_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCCTTAATTCAGCAGGAAGCGATTATGGGAAGACCATTATCC
CAATACCTTAAGTTGGGTTGGATGGGTCTTTTATGCATCATAGGTGTGTT
ATCATTTTGGGAGATGATTTACAAGTTTTTATCATCTTTTACAGGGAAGA
AACTAAATAGGAAGTTAGATTCTGATATTTCTTCTTTCTTTATGTTTTTT
CTATTTTTCTTTTTTCCTTAGGTAAGAGAAGCGGGTTAAGAAAAAAATGG
GGCCAAGGACCCTCAGGACACAAGAACTAAGGAACAGCCTGGATTCTTCC
ATTTTCATTTTTTGCCAGCAGCTGATCTAGTGCCACGATACCCAGAGGCG
ATCCTGTGCCACATCACTCCATACCCAAATACTGGCAGGGAAGAATGCTG
GCTTTTTCAAGAGTGCTGACACACTTGTGAGCAGAGGTACGACCACCAAT
TCTGCTCCTAGGTATCTGCCTGGGAATCTCAGGAAAAGGAACCAAGGAGC
AGCCTTGGACAGCATCCTTTCCATTTCCATCTGCTCCTGGAGCTGACTCT
GTTTCACAGCTCTCCACACCCAAATTTCTACCAGAGAGACTAACACACAG
GTTTGCAGGAGGGACAAGCCACATTCAAAGGCAGCAAGACTGACTCACAC
CAAAGACATCTACATGGCAAAGGGAAGGGCAAGAAGACAAGCNACAAAAA
CCAAGGCTACTTGGCATTATTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATGCTACTTATTACTCTTGCTAAACTGTTTGTTTGTTTGTT
TGTTTGTTTGTTTTGCTTTTACTGGAGGTGGAAAGGCTGGTATGTGTGTG
TAGACATAATGACTTCAATCAGAAGTGTAGAAGTCCACTCTGAGGACAGA
GGATCTGATTGGACTATGATGCATGGAGCATGAAAAATCCGCAAAAGAAA
CAAGAATATATTTGAGTCAAAACATAGGTAGGTAAGTCATGTCCCATAGG
CTGGCAGCAGGGAGGCACTGCCATCTAGTTGCAATCTATGTCAGTTACAA
AATATTTTTGTATCACTCAAGGCTGAACAGGATGCATTAGGAAGAAGACA
GAAAAATAAAATTATTTTCCAAAGCTATTTCCACAACAAAAATATAATTT
GGTATGAATATAGTTTCACATATATATATACATAGTTATATATACATATA
TACATACATATACATATAAATATTATATAGGGAACATAATTATTTTTATG
AATATTGAAATTAAAATATTTAGTGGAACTTGAATAAAAATGTTAAAATT
ATCACAGAAAACAGTGAATCTGGAAAGAAATTCAAATTATCAAAAGCTTT
AGTAACATGATGTGTAAAGTANGTAAGTTGGCAATGCTTGTAGTCTCTGC
ACTCTCCAGACCAGAGTTGACTAGGCAGCCACTGGAGATATGCAACCTAT
TTCAGTATAAGAACAAAACCCCACGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_l19.g1 MSMg01no498_l19.g1 CHROMAT_FILE:
MSMg01no498_l19.g1 PHD_FILE: MSMg01no498_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:54 2005
         (569 letters)



>mm_chr7_93569379_93570347
          Length = 969

 Score =  857 bits (443), Expect = 0.0
 Identities = 548/617 (88%), Gaps = 58/617 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   tacttattactcttgctaaactgtttgtttgtttgtttgtttgtttgttttgcttttact 64
           |||||||||||||||||||||    ||||||||||||||||||||||||||| |||||||
Sbjct: 209 tacttattactcttgctaaac----tgtttgtttgtttgtttgtttgttttgtttttact 264

                                                                       
Query: 65  ggaggtggaaaggctggtatgtgtgtgtagacataatgacttcaatcagaagtgtagaag 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaggtggaaagactggtatgtgtgtgtagacataatgacttcaatcagaagtgtagaag 324

                                                                       
Query: 125 tccactctgaggacagaggatctgattggactatgatgcatggagcatgaaaaatccgca 184
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tccactctgaggacaaaggatctgattggactatgatgcatggagcatgaaaaatcagca 384

                                                                       
Query: 185 aaagaaacaagaatatatttgagtcaaaacataggtaggtaagtcatgtcccataggctg 244
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 385 aaagaaacaagaatatatttgagtcaaaacataggtagataagtcatgtcccatagactg 444

                                                                       
Query: 245 gcagcagggaggcactgccatctagttgcaatctatgtcagttacaaaatatttttgtat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 gcagcagggaggcactgccatctagttgcaatctatgtcagttacaaaatatttttgtgt 504

                                                                       
Query: 305 cactcaaggctgaacaggatgcattaggaagaagacagaaaaataaaattattttccaaa 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cactcaatgctgaacaggatgcattaggaagaagacagaaaaataaaattattttccaaa 564

                                                                       
Query: 365 gctatttccacaacaaaaatataatttggtatgaatatagtttca--------cata--t 414
           |||||||||||||||||||||||||||||||||||||||||||||        ||||  |
Sbjct: 565 gctatttccacaacaaaaatataatttggtatgaatatagtttcatatatatacatagtt 624

                                                                       
Query: 415 atatatacatagt-----------------------------------------tatata 433
           ||||||| ||| |                                         ||||||
Sbjct: 625 atatatatata-tatatatatatatatatatatatatatatatatatatatatatatata 683

                                                                       
Query: 434 tacatatatacatacatatacatataaatattatatagggaacataattatttttatgaa 493
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 tacatatatacatacatatacatataaatattatatagggaacataattatttt-atgaa 742

                                                                       
Query: 494 tattgaaattaaaatatttagtggaacttgaataaaaa-tgttaaaattatcacagaaaa 552
           ||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 743 tattgaaattaaaatctttagtggaacttgaataaaatctgttaaaattatcacagaaaa 802

                            
Query: 553 cagtgaatctggaaaga 569
           |||||||||||||||||
Sbjct: 803 cagtgaatctggaaaga 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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