BAC Information

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BAC

Clone NameMSMg01-500E02
Chromosome7 (Build37)
Map Location 30,399,113 - 30,566,700
singlet/doubletdoublet
Overlap gene1700067C01Rik, Zfp84
Upstream geneC330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik
Downstream geneLOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500E02.T7 (MSMg01no500_e02.b1)MSMg01-500E02.TJ (MSMg01no500_e02.g1)
ACCAG576140AG576141
length645670
length of high quality
(start - end)		602 (44 - 645)611 (60 - 670)
definitionCHROMAT_FILE: MSMg01no500_e02.b1 PHD_FILE: MSMg01no500_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:52 2005CHROMAT_FILE: MSMg01no500_e02.g1 PHD_FILE: MSMg01no500_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,566,099 - 30,566,700)(30,399,113 - 30,399,724)
sequence
GACTCACTATATTCAGAGGATCCGCGGAATTCCAGCACGTGCGAGGCTAC
CCGGAGGATCGGGAGGTGAAGGCCAGCCTAGGCTAAATAGCAAGACTTAT
CTCAAAATGAAAACGAATTTTAAAGGGGAGGGGATACATCCAAAAATATA
GGAACCCAGCTTATGAGTTTGTGATTGAAATGATAGGATCAAGTGTTCAG
ACAACCAAGCTGTCAGCCGTGAAGGTAGCCGCCTAACTCGACATAGCCCA
AACTGCTCCAAGTCCTGTATTGACATTTTAAATCATAAACCATGAGAGGA
AAGCATGGGATTTTGGAAAATATATTGGAATGGGGGAAAATGATTTACAA
GCATTAACACCAAGACAGATACCTTCCAATCATGAATTGCTTAAGTCTAC
AAATCCAAACCAGGCATAAAAAAGAGAAAACTGGTATAAACACAGTTCGA
GAGGATTATAAGTCTTACATAGCCATCAGGAAAGCAATCATTCAACAGAA
AATGGTACTGAGACACTCCACAGAAAATGTAATATTTGAAAATAGGAAAA
TATGGCATTAGATGCAAGTTACATACAGCAGGAAAAATGCAAATTAAACT
GTCATAACACTTTTTACCTAACAGACTAGCGAAATCAAAGCTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTCACAGTAGTTAAAAAAAAAACTGGGTAGGACATTTTAA
GGCCAACAGTAAACACTGAAATCCTGTTTAAAACTAAGGAGGTCACAATG
AAACACCACAAACATCAAAATCGACATGAAACAGACATGTTTTTATAAAA
TTAAAGGTGTGTGTTAAGGATGTGTGTGTATTTCCAGCCAGAGGAATTAA
AGGTGTGTGTTAAGGGCTGAGCCACAACACAGCTAGAAACAGGGTTTTTC
CCCCCAGTAACTAACACAAACTTGGGGTTCAGAGTGCGATCAAATATCCT
GCAACAAAAGAATATCTTTGTTATGATATATTCCAAAAATATTTGTAAAA
AACTCACTCTGTGAGATCAGCATAACTTATTTGGTTCAATCAACCTTTTT
TAAAAAAATTATTTCAAATTTTAGTTTCCTAATGTGACTTTGTAGTGCCA
GGGAAATGTTACTAATCCTCCTCCCAAAAAACAGACAGGAGCTGATCTGA
TGCAACTCACAGCAGCATCTTTATTCTATTTGAGCTAGCTTGGGCCCCAC
CCCCAACACACCACTGTCATGCAGAATGGTTTTAGTGATAGGGGAGCTCT
ATCTATCAGGGCAAGGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_e02.b1 MSMg01no500_e02.b1 CHROMAT_FILE:
MSMg01no500_e02.b1 PHD_FILE: MSMg01no500_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:52 2005
         (602 letters)



>mm_chr7_30565825_30566826
          Length = 1002

 Score = 1149 bits (594), Expect = 0.0
 Identities = 600/602 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctacccggaggatcgggaggtgaaggccagcctaggctaaatagcaagacttatctc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 aggctatccggaggatcgggaggtgaaggccagcctaggctaaatagcaagacttatctc 817

                                                                       
Query: 61  aaaatgaaaacgaattttaaaggggaggggatacatccaaaaatataggaacccagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aaaatgaaaacgaattttaaaggggaggggatacatccaaaaatataggaacccagctta 757

                                                                       
Query: 121 tgagtttgtgattgaaatgataggatcaagtgttcagacaaccaagctgtcagccgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgagtttgtgattgaaatgataggatcaagtgttcagacaaccaagctgtcagccgtgaa 697

                                                                       
Query: 181 ggtagccgcctaactcgacatagcccaaactgctccaagtcctgtattgacattttaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 696 ggtagccgcctaactcgacatagcccaaactgctccaagtcctgtattggcattttaaat 637

                                                                       
Query: 241 cataaaccatgagaggaaagcatgggattttggaaaatatattggaatgggggaaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cataaaccatgagaggaaagcatgggattttggaaaatatattggaatgggggaaaatga 577

                                                                       
Query: 301 tttacaagcattaacaccaagacagataccttccaatcatgaattgcttaagtctacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tttacaagcattaacaccaagacagataccttccaatcatgaattgcttaagtctacaaa 517

                                                                       
Query: 361 tccaaaccaggcataaaaaagagaaaactggtataaacacagttcgagaggattataagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tccaaaccaggcataaaaaagagaaaactggtataaacacagttcgagaggattataagt 457

                                                                       
Query: 421 cttacatagccatcaggaaagcaatcattcaacagaaaatggtactgagacactccacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cttacatagccatcaggaaagcaatcattcaacagaaaatggtactgagacactccacag 397

                                                                       
Query: 481 aaaatgtaatatttgaaaataggaaaatatggcattagatgcaagttacatacagcagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaaatgtaatatttgaaaataggaaaatatggcattagatgcaagttacatacagcagga 337

                                                                       
Query: 541 aaaatgcaaattaaactgtcataacactttttacctaacagactagcgaaatcaaagctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaatgcaaattaaactgtcataacactttttacctaacagactagcgaaatcaaagctt 277

             
Query: 601 ta 602
           ||
Sbjct: 276 ta 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no500_e02.g1 MSMg01no500_e02.g1 CHROMAT_FILE:
MSMg01no500_e02.g1 PHD_FILE: MSMg01no500_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:52 2005
         (611 letters)



>mm_chr7_30398913_30399924
          Length = 1012

 Score = 1160 bits (600), Expect = 0.0
 Identities = 609/612 (99%), Gaps = 1/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcacagtagttaaaaaaaaaa-ctgggtaggacattttaaggccaacagtaaacactg 59
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcacagtagttaaaaaaaaaaactgggtaggacattttaaggccaacagtaaacactg 260

                                                                       
Query: 60  aaatcctgtttaaaactaaggaggtcacaatgaaacaccacaaacatcaaaatcgacatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcctgtttaaaactaaggaggtcacaatgaaacaccacaaacatcaaaatcgacatg 320

                                                                       
Query: 120 aaacagacatgtttttataaaattaaaggtgtgtgttaaggatgtgtgtgtatttccagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagacatgtttttataaaattaaaggtgtgtgttaaggatgtgtgtgtatttccagc 380

                                                                       
Query: 180 cagaggaattaaaggtgtgtgttaagggctgagccacaacacagctagaaacagggtttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaggaattaaaggtgtgtgttaagggctgagccacaacacagctagaaacagggtttt 440

                                                                       
Query: 240 tccccccagtaactaacacaaacttggggttcagagtgcgatcaaatatcctgcaacaaa 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccccagtaactaacacaaacttggggttcagagtgcgatcaaatatcctgcaacaaa 500

                                                                       
Query: 300 agaatatctttgttatgatatattccaaaaatatttgtaaaaaactcactctgtgagatc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatatctttgttatgatatattccaaaaatatttgtaaaaaactcactctgtgagatc 560

                                                                       
Query: 360 agcataacttatttggttcaatcaaccttttttaaaaaaattatttcaaattttagtttc 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcataacttatttgattcaatcaaccttttttaaaaaaattatttcaaattttagtttc 620

                                                                       
Query: 420 ctaatgtgactttgtagtgccagggaaatgttactaatcctcctcccaaaaaacagacag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaatgtgactttgtagtgccagggaaatgttactaatcctcctcccaaaaaacagacag 680

                                                                       
Query: 480 gagctgatctgatgcaactcacagcagcatctttattctatttgagctagcttgggcccc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagctgatctgatgcaactcacagcagcatctttattctatttgagctagcttgggcccc 740

                                                                       
Query: 540 acccccaacacaccactgtcatgcagaatggttttagtgataggggagctctatctatca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acccccaacacaccactgtcatgcagaatggttttagtgataggggagctctatctatca 800

                       
Query: 600 gggcaaggcttt 611
           ||||||||||||
Sbjct: 801 gggcaaggcttt 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space:   602202
Effective search space used:   602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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