Query= MSMg01no501_p03.b1 MSMg01no501_p03.b1 CHROMAT_FILE:
MSMg01no501_p03.b1 PHD_FILE: MSMg01no501_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:51 2005
(608 letters)
>mm_chr7_104598082_104599089
Length = 1008
Score = 1040 bits (538), Expect = 0.0
Identities = 588/608 (96%), Gaps = 6/608 (0%)
Strand = Plus / Plus
Query: 1 catgtctgtattccagccagagatggtaaaggcgtactattccagctggatcccacaggc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtctgtattccagccagagacggtaaaggcgtactattccagctggatcccacaggc 260
Query: 61 ctagaatgtctttggatgagatccctttaccagagtagccatgttgctggattaaaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaatgtctttggatgagatccctttaccagagtagccatgttgctggattaaaattc 320
Query: 121 ctctacacaccccaggaccacctgcccagcgatggtacagcccatagtgggctgagttct 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctctacacaccccaggaccacctgcccagggatggtacagcccatagtgggctgagttct 380
Query: 181 tccacatcactcatcaataaagaaaatcccagccgggcagtggtgtcacacgcctttaat 240
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 381 tccacatcactcatcaataaagaaaatcccagcagggcagtggtgtcgcacgcctttaat 440
Query: 241 cctagcacttgttaggcagaggcaggcggatttctgagttcaaggccagcctggtctaca 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagcacttgggaggcagaggcaggcggatttctgagttcaaggccagcctggtctaca 500
Query: 301 gagtgaattcccagacagccagggctacacagagaatgccgataaatgcagatacaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgaattcccagacagccagggctacacagagaatgccgataaatgcagatacaaact 560
Query: 361 cgcacgaggatggtttgctatactcgttatggttttcaccagcagatccccactacttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 561 tgcacgaggatggtttgctatactcgttatggttttcaccagcagatccccactacatga 620
Query: 421 ctgctgttatactattctatttttctttttattatttctaactgtgtgtgtgcatgttta 480
||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct: 621 ctgctgtaatactattctatttttctttttattatttttaactgtgcgtgt------tta 674
Query: 481 tggagcagcatgtatatgtgtatgtacatgtgcatgtgtatgtatgtgtgtagaggctag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tggagcagcatgtatatgtgtatgtacatgtgcatgtgtatgtatgtgtgtagaggctag 734
Query: 541 aagacaactcaggtgtcatcctatctgtctttacacagagtctcttcttggtctggagtt 600
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 735 aagacaactcaggtgtcatcctgtctgtctttacacagggtctcttcttggtctggagtt 794
Query: 601 catcaatt 608
||||||||
Sbjct: 795 catcaatt 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_p03.g1 MSMg01no501_p03.g1 CHROMAT_FILE:
MSMg01no501_p03.g1 PHD_FILE: MSMg01no501_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:51 2005
(262 letters)
>mm_chr7_104762031_104762692
Length = 662
Score = 501 bits (259), Expect = e-146
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 1 aattattcagtctaactcccaatccattatttctcccacatttacactgaaatccttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aattattcagtctaactcccaatccattatttctcccacatttacactgaaatccttcat 400
Query: 61 agaaatcactttggtctgtttgatgcccactaccctctcctctcctgttgcctgtgagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agaaatcactttggtctgtttgatgcccactaccctctcctctcctgttgcctgtgagtc 340
Query: 121 cctgagagctaatttccatgtcatgatgtgaatcaacttcgtccttcaatgcctgggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cctgagagctaatttccatgtcatgatgtgaatcaacttcgtccttcaatgcctgggaag 280
Query: 181 tgtaagtctcaggcgttccaaaaccagtatgcatgcatgtctttcattctaagactgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgtaagtctcaggcgttccaaaaccagtatgcatgcatgtctttcattctaagactgttg 220
Query: 241 ctgctgctcatactgcctg 259
|||||||||||||||||||
Sbjct: 219 ctgctgctcatactgcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
