BAC Information

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BAC

Clone NameMSMg01-502B18
Chromosome7 (Build37)
Map Location 112,822,833 - 112,823,428
singlet/doubletsinglet
Overlap geneDnhd1
Upstream geneGA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1
Downstream geneLOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502B18.T7 (MSMg01no502_b18.b1)MSMg01-502B18.TJ (MSMg01no502_b18.g1)
ACCAG577544AG577545
length744719
length of high quality
(start - end)		607 (13 - 619)560 (58 - 617)
definitionCHROMAT_FILE: MSMg01no502_b18.b1 PHD_FILE: MSMg01no502_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:04 2005CHROMAT_FILE: MSMg01no502_b18.g1 PHD_FILE: MSMg01no502_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCTATTCGGAGAGGATCCGCGGAATTCCTAGTTCTCTCCTCTATGAA
ATCTGAAGTTCTCAGCCTGATTAGAATCCTATTATTTCTCTATTTTTGTT
CCTTCTCTGTCTCCTGATGTGAAGGTACTGCAGTCTACAGATCTGAGGAC
CTCCAGAGATCTCCTGTATTCTGAAGGTATTTAAAGGGGCTAAGATGGGA
CAGGAAGTCTGAATGGAGGGGAGGGGCACATGTAGACTGCAAATGGCATA
AGAAGTTGACAAGAGAGTCAGCCAGTACAGGTCAGACCTTGGATGTAATA
GGGCAGCTCTAAGCTGGGTAATGTTCATGCCTATTGGGAAGTAGGAGAGT
CTAGAGGGAGTTGTGTTCACTAATCCATGTGCTTATTTCCATGTGCTTGC
TAATTCATGTGTGTGATCGGTGTGTGTGTGTGTGTGGATACATTGTCTGT
TCCCTGATTCACGTCACATCCCAGGTTTTTTCCATTTTCACGTGCACTTT
CTTTTCTGTTGAGTTTCATTGCTTTCCTAATGCTCTGCTTGCTCAGCTTC
TGCTTTAGCTCCTGTGGCTGTGCGATTTATGATAAGGAATATTGAGATTT
GAGTTATTAATCCTCAATTAAAAATACCCTTTTAATAAAAATGGGTTGTG
CATTGGTGTTTTGCAAGGTGCCTGTATCTCCTGAAAACTGGAAGTGTGAG
CCCTGTGGGAGCAAAAGAATGACCCTGGGCACTTGAAATAACAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTAAAGGAGTATGTGTGTGTGTGTGTGTGTGTGTGTTGGGCG
GATTTGTTAAAATGGCCTACAGGTTGTGATCCAGCTAGTCCAACAGTGGC
TATCTACGAAAAGAAGGTCCAAGAATCCAGCAGCTGTTGTTCAGTCCACA
CTGCTGGATGCCTCAGCTGGTCTTCAGTATATATCAGAATCCCAAAGAAA
TAGGCTATAATCACAGTGAAGGAATGGACTTGCCAGCTAGAGTGAGATGG
TGCAATTATGCAATGTCCTTTATATGGGACCCCAAGAGAAGGTATGGCCC
AGATTAATAGTGTGTCTTCCCACTTCAAAAGAGCTATATTTAAAGATACT
TCTTCCCATATCAAAAGATCTGGTTAAAAGTGGGTCTTCCCATTTCAAAT
GATTTAATTTTAAAGATCCTTGAAGGTGTATTCCAGATGTAGTTGAGTTG
ACACTCAAGAATAGCTATCATAGGTTATATGATGACATCCTGTCTTTTAA
ACAAAAGGTTCTTGAATTCACACATTTGTGAATATCCTATTTTTCCTTTT
TTTTTTTTCAACTCCAAGTGCCCATTCTTTTTTTTTCTTTCTTTCCTTTT
ATTAGGNATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCC
ATACGCTCCCCCACCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_b18.b1 MSMg01no502_b18.b1 CHROMAT_FILE:
MSMg01no502_b18.b1 PHD_FILE: MSMg01no502_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:04 2005
         (607 letters)



>mm_chr7_112822622_112823628
          Length = 1007

 Score = 1114 bits (576), Expect = 0.0
 Identities = 591/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggaattcctagttctctcctctatgaaatctgaagttctcagcctgattagaatcctatt 71
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggaattcctagtcctatcctctatgaaatctgaagttctcagcctgattagaatcctatt 271

                                                                       
Query: 72  atttctctatttttgttccttctctgtctcctgatgtgaaggtactgcagtctacagatc 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atttctctatttttgttccttctctgtctcctgatgtgaaggtactgcagtctacagatc 331

                                                                       
Query: 132 tgaggacctccagagatctcctgtattctgaaggtatttaaaggggctaagatgggacag 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgaggacctccagagatctcctgtattctgaaggtatttaaaggggctaagatgggacag 391

                                                                       
Query: 192 gaagtctgaatggaggggaggggcacatgtagactgcaaatggcataagaagttgacaag 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 392 gaagtctgaatggaggggaggggcacatgtagactgcaaatggcataagaagtagacaag 451

                                                                       
Query: 252 agagtcagccagtacaggtcagaccttggatgtaatagggcagctctaagctgggtaatg 311
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 452 agagtcagccagtacaggtcagaccttggatgtaatagggcagctctaagctggttaatg 511

                                                                       
Query: 312 ttcatgcctattgggaagtaggagagtctagagggagttgtgttcactaatccatgtgct 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttcatgcctattgggaagtaggagagtctagagggagttgtgttcactaatccatgtgct 571

                                                                       
Query: 372 tatttccatgtgcttgctaattcatgtgtgtgatcggtgtgtgtgtgtgtgtggatacat 431
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 572 tatttccatgtgcttgctaattcatgtgtgtgatcggtgtgtgggtgtgtgtggatacat 631

                                                                       
Query: 432 tgtctgttccctgattcacgtcacatcccaggttttttccattttcacgtgcactttctt 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgtctgttccctgattcacgtcacatcccaggttttttccattttcacgtgcactttctt 691

                                                                       
Query: 492 ttctgttgagtttcattgctttcctaatgctctgcttgctcagcttctgctttagctcct 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttctgttgagtttcattgctttcctaatgctctgcttgctcagcttctgctttagctcct 751

                                                                   
Query: 552 gtggctgtgcgatttatgataaggaatattgagatttgagttattaatcctcaatt 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gtggctgtgcgatttatgataaggaatattgagatttgagttattaatcctcaatt 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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