Query= MSMg01no502_b21.b1 MSMg01no502_b21.b1 CHROMAT_FILE:
MSMg01no502_b21.b1 PHD_FILE: MSMg01no502_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:04 2005
(343 letters)
>mm_chr7_62243338_62244080
Length = 743
Score = 563 bits (291), Expect = e-165
Identities = 330/359 (91%), Gaps = 27/359 (7%)
Strand = Plus / Plus
Query: 7 gaattctatcagacttctcgtgaccataagtcaaatggatcatgcaccccattgatatgt 66
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 gaattctatcagacttctcgtgaccataagtcaaacggatcatgcaccccattgatatgt 240
Query: 67 gtggttttagcttactttaatcaattgaaatcttacggcagaagaatgtctcattatgtg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggttttagcttactttaatcaattgaaatcttacggcagaagaatgtctcattatgtg 300
Query: 127 aacctgacagttcctaaaagttcgcaacatcaagat---------aaa------------ 165
||||||||||||||||||||||| |||||||||||| |||
Sbjct: 301 aacctgacagttcctaaaagttcccaacatcaagatgaacttgttaaatttgtggtcaag 360
Query: 166 -----cttgttaaatttgtggttatctaacgtagtacatccaaacatacaaagaagtaag 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgaacttgttaaatttgtggttatctaacgtagtacatccaaacatacaaagaagtaag 420
Query: 221 gaggacaaacgacataagtcttccacttaacaatctaaagaattcatagaagtcatcaga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaggacaaacgacataagtcttccacttaacaatctaaagaattcatagaagtcatcaga 480
Query: 281 acactaatggagagac-gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 338
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acactaatggagagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_b21.g1 MSMg01no502_b21.g1 CHROMAT_FILE:
MSMg01no502_b21.g1 PHD_FILE: MSMg01no502_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:04 2005
(622 letters)
>mm_chr7_62317945_62318966
Length = 1022
Score = 1156 bits (598), Expect = 0.0
Identities = 616/622 (99%)
Strand = Plus / Minus
Query: 1 tcagacccaaagctaataggcacagaagaaacacaaacacactcactgtggcctggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tcagacccaaagctaataggcacagaagaaacacaaacacactcactgtggcctggtgct 763
Query: 61 tctctgctttctcagatgtctctttaagctgattctgcagggcttcctggagagacttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tctctgctttctcagatgtctctttaagctgattctgcagggcttcctggagagacttca 703
Query: 121 tttcttccctaggttagtaggcaaaagaggaaaggggcaatatcataagatttttgatga 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tttcttccctaggttagtagataaaagaggaaaggggcaatatcataagatttttgatga 643
Query: 181 actttacagaaagaaggttgtatatctagctacatttaaggagtagttaattataaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 actttacagaaagaaggttgtatatctagctacatttaaggagtagttaattataaatat 583
Query: 241 gaaaagctacagagatacaaaaagatgcatctaaatacaccagtaacaagggactggctt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 582 gaaaagctacagagatacaaaaagatgcatctaaatacactagtaacaagggactggctt 523
Query: 301 tcatgaaaaaactaaaagctggttatatttaagggaaattgtcttttataagaatcccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcatgaaaaaactaaaagctggttatatttaagggaaattgtcttttataagaatcccac 463
Query: 361 agtgtgagtcaatgtgaatgatgaaatatgttcaatcaactcaatgtactaatttgaatt 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtgtgagtcaatgtgaacgatgaaatatgttcaatcaactcaatgtactaatttgaatt 403
Query: 421 ggaaagttaatttcactaacagcatgtagggcatgaacatgctgggtcaaaagtcattat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggaaagttaatttcactaacagcatgtagggcatgaacatgctgggtcaaaagtcattat 343
Query: 481 agacttctgaaagacattattgtacctttctgatcatcataatttattaattttatagaa 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agacttctgaaagacattgttgtacctttctgatcatcataatttattaattttatagaa 283
Query: 541 ttttgacttatatatactttatattcctgagaattttttatggaatcataagagaaagaa 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttttggcttatatatactttatattcctgagaattttttatggaatcataagagaaagaa 223
Query: 601 atttagttataactatgatttc 622
||||||||||||||||||||||
Sbjct: 222 atttagttataactatgatttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
