Query= MSMg01no502_d02.b1 MSMg01no502_d02.b1 CHROMAT_FILE:
MSMg01no502_d02.b1 PHD_FILE: MSMg01no502_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:09 2005
(572 letters)
>mm_chr7_54052166_54053137
Length = 972
Score = 940 bits (486), Expect = 0.0
Identities = 540/572 (94%), Gaps = 24/572 (4%)
Strand = Plus / Minus
Query: 1 acaactgtactttcagttctaggggatctgacaccaccatagaaacccacaggcagacag 60
|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 825 acaactatacttccagttctaggggatctgacaccaccatagaaacccacaggtagacag 766
Query: 61 aacaccaatatacagtagtaaaatcaaccaacttaaaaaaaaaaggaaatcacaagtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aacaccaatatacagtagtaaaatcaaccaacttaaaaaaaaaaggaaatcacaagtcta 706
Query: 121 gggttaggtgtggtagtgtacacctttaatcttaccattcaagaatcagaggcaattgat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 705 gggttaggtgtggtagtgtacacctttaatcttaccattcaagaatcagaggcaatcgat 646
Query: 181 ccctgtgagttcaaggccagtcagggctgttatacagagaaaacctgtgtgggaaatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccctgtgagttcaaggccagtcagggctgttatacagagaaaacctgtgtgggaaatgga 586
Query: 241 gggtcaggagaggaaggaaaggaagtcacaaggctggatattgagaatattgattggagc 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 585 gggtcaggagaggaaggaaaggaagtcacaaggctagatattgagaatattgattggagc 526
Query: 301 caagcccttagtgtgcttcaagccagttttctgtacccaggcatgcatgcttaccaagca 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 525 caagcccttagtgtgcttcaagccagttttctgtacccaggcctgcatgcttaccaagca 466
Query: 361 atttacattgggctctacctacagtcctgtgttctgttttgttttgttttgttgtttttt 420
|||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 465 atttacattgggctctacctacagtcctgt------tttt--------------tttttt 426
Query: 421 gttttgccagttctggaaatgaaacccaggatcttacaggtgcctagcaagaactcttag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ----tgccagttctggaaatgaaacccaggatcttacaggtgcctagcaagaactcttag 370
Query: 481 ctttgagctgcattcctaactcagaaacctgttttaccatattttaaactggtgtcttta 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctttaagctgcattcctaactcagaaacctgttttaccatattttaaactggtgtcttta 310
Query: 541 aatggacaacatcaaaagacagaaagctaaac 572
||||||||||||||||||||||||||| ||||
Sbjct: 309 aatggacaacatcaaaagacagaaagccaaac 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_d02.g1 MSMg01no502_d02.g1 CHROMAT_FILE:
MSMg01no502_d02.g1 PHD_FILE: MSMg01no502_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:09 2005
(512 letters)
>mm_chr7_53873291_53874206
Length = 916
Score = 893 bits (462), Expect = 0.0
Identities = 498/516 (96%), Gaps = 12/516 (2%)
Strand = Plus / Plus
Query: 1 caacccagcctgggctacacggaagtgagaccatctcaaaagcaaacgaaagcgcagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 caacccagcctgggctacacggaagtgagaccatctcaaaagcaaacgaaagcgcagtat 268
Query: 61 gctgtatgggcatatactgtatgctctcctcgctaacacttcatcagcaatgagccacac 120
||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 269 gctgtatggccata------a--ctctcctcgctaacacttcatcagcaatgagccacac 320
Query: 121 aatggttcgctatcacacagcctgggtgcgcagcagcctggatccccccc----ctcccc 176
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct: 321 aatggttcgctatcacacagcctgggtgcgcaacagcctggatccccccccccacccccc 380
Query: 177 gacgctcaggcagtgacgcccccatcgctgagcagtacgtggctatatataaattaactg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacgctcaggcagtgacgcccccatcgctgagcagtacgtggctatatataaattaactg 440
Query: 237 ttgagctcttgatcttcccatcacagttcccccaagaggaagataatcttttccaccctg 296
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagctcttgatcttcccatcacagctcccccaagaggaagataatcttttccaccctg 500
Query: 297 tataattgagagaacgcagaggctgagcactgagctgacgcttgatgtgagtactttata 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataattgagagaacgcagaggctgagcactgagctgacgcttgatgtgagtactttata 560
Query: 357 cgtaccatccaactaagttcttacagctacccagaaagtacgttccagatgaagagacgg 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 cgtaccatccaactaagttcttacagctacccagaaagtatgttccagatgaagagacgg 620
Query: 417 tctcaaaagcgaaagcaactgtgcctaaaattatacctagagcggtaccgaactcccact 476
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tctcaaaagcgaaagcaactgtgcctaaaattatacctagagcggtaccaaactcccact 680
Query: 477 ccaaaatctataccctcccccgcaaaactctgactc 512
||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaaatctataccctcccccgcaaaactctgactc 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 916
Length adjustment: 10
Effective length of query: 502
Effective length of database: 906
Effective search space: 454812
Effective search space used: 454812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
