BAC Information

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BAC

Clone NameMSMg01-502G22
Chromosome7 (Build37)
Map Location 73,762,840 - 73,763,314
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3
Downstream geneAsb7, Lins2, Lass3, Adamts17, Lysmd4, Mef2a, EG665304, Lrrc28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G22.T7 (MSMg01no502_g22.b1)MSMg01-502G22.TJ (MSMg01no502_g22.g1)
ACCAG577788AG577789
length758770
length of high quality
(start - end)
487 (22 - 508)540 (58 - 597)
definitionCHROMAT_FILE: MSMg01no502_g22.b1 PHD_FILE: MSMg01no502_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:28 2005CHROMAT_FILE: MSMg01no502_g22.g1 PHD_FILE: MSMg01no502_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTACTATAGTTAGAGGATCCGCGGAATTCAGGTCAAAATGAACTCCT
ATTTACTGCTGATGTAAAGTAGTGCAGCTGTTATGGAAATCAATGTGAAT
GAGTCTTACAAAAATGAAAACTACATCTACCATATGAGGCAACTATACTA
CTCTGTCATATTCACTCAATGGACTCCAAGTGAACACATCACAGAGATAT
CTACCCATCAGTGCTTTCTGCCTGCAGTGCTGTTCACAAAGCTACGCCTA
GGTGTCTATCAACAGAGGACTGGATAAAAGATATATACACAATGGCATAG
TACTTAGCCTTTTAGAGAAATTTTTCCATTCATAAAAATAAGCATGGAAC
TAGAGACTATTATGGGTGAAGGAAGCCAGGAAAAGAAAGATGATAAAAAT
AAAAGATGATAAACACATTTTTAGCTTGATAGTATTTATAAACATGCATG
TAACAATTAGAAAGAGGCCATTGATTTGAAGAACAAGCGGTACATGGTGG
GGAGGGGTGGTTGATAAAGGATAATAATTGNTTTTTNTTTTTTTTTTNNT
TTTTTTTTTTTNNTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTNTTTNTTTTTTNNNTTTNNTTTTTTTTTTTTTTTTTTTTTTTNT
TTTNTTNTTNTNTNNTTTTTNTTTTTTTTNTTTTTNNNTNTNTTNNNNTT
TTTTTTTTTTNTNNTTTAANNTNTTTTTTTTTTTTTTTTTTTNNTNNTTT
TTTCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTTAGACCTGCAAAATGAAGAGGTGAACAGGAAACCTGCAGA
ATGGAATCTTTGCCAGCTACACATCTGACAGAGGATTACTACCCAGAATA
TACAAAGAATTCACAAAATAAATTTAAAAAAAAGATCAAATGGCTTATTT
TAAAATGTGCCCAAGGCTAGAACAGAGAATTGTCAAAGGAAGAAACAAAA
ATAACTAAGAAATATCTCCAAAAATGCTCACCGCCCCTAGCAATTAGGGA
AATGTCCAAATGACATTGAGGGTTCATCTTACCCCAGTCAGAGTGGCAAA
AATCAACAGAACAATAGACAGCAGATGCTGGAGGGGATACAGGGGAAAAG
AGTCCTCATTTACCACTTTGCAAACCGGGGCAGCGATTATGGGAATCAGT
GTGGAGAATTCTTTAAAAGCTAAAAGGAAATCGACCTTATGACCTAGCCA
TTCCATTCCTTGACGTATGCCCTAAAAACGTGAGTGTATTTAGAGAGACT
TGTGCAGTCATGCTCATTACTGCTTTATTCACAAAGATAGGAAGTGGAAA
CAGACTAAGTTGTCTTCAGCCCATGAATGGAGAATGAAGGTGTGGTAGTA
GATATACCCTGTCTAACGTCATTCGTATGCAAGGAAAGTTACAGCCATGA
ACATTACTAGTAGATGAAGCTAGCTATAAACGTCATTTTGAGTGGGGTAC
CCAGACTCGACAGGAAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g22.b1 MSMg01no502_g22.b1 CHROMAT_FILE:
MSMg01no502_g22.b1 PHD_FILE: MSMg01no502_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:28 2005
         (487 letters)



>mm_chr7_73762621_73763516
          Length = 896

 Score =  775 bits (401), Expect = 0.0
 Identities = 457/489 (93%), Gaps = 23/489 (4%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaggtcaaaatgaactcctatttactgctgatgtaaagtagtgcagctgttatgg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaattcaggtcaaaatgaactcctatttactgctgatgtaaagtagtgcagctgttatgg 279

                                                                       
Query: 66  aaatcaatgtgaatgagtcttacaaaaatgaaaactacatctaccatatgaggcaactat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaatcaatgtgaatgagtcttacaaaaatgaaaactacatctaccatatgaggcaactat 339

                                                                       
Query: 126 actactctgtcatattcactcaatggactccaagtgaacacatcacagagatatctaccc 185
           |||| ||||||||||| |||||||||||||              ||||||||||||||||
Sbjct: 340 actattctgtcatattgactcaatggactc--------------acagagatatctaccc 385

                                                                       
Query: 186 atcagtgctttctgcctgcagtgctgttcacaaagctacgcctaggtgtctatcaacaga 245
           |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct: 386 atcagtgctttctgcctgcagtgctgttcacaaagctaagtctaggtgtctatcaataga 445

                                                                       
Query: 246 ggactggataaaagatatatacacaatggcatagtacttagccttttagagaaatttttc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggactggataaaagatatatacacaatggcatagtacttagccttttagagaaatttttc 505

                                                                       
Query: 306 cattcataaaaataagcatggaactagagactattatgggtgaaggaagccaggaaaaga 365
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 506 cattcataaaaataagcatggaactagagactattatggatgaaggaagccaggaaaaga 565

                                                                       
Query: 366 aagatgataaaaataaaagatgataaa------cacatttttagcttgatagtatttata 419
           |||||||||||||||||||||||||||      ||||||||||||||||||||||||| |
Sbjct: 566 aagatgataaaaataaaagatgataaaagatgacacatttttagcttgatagtatttaga 625

                                                                       
Query: 420 aacatgcatgtaacaattagaaagaggccattgatttgaag---aacaagcggtacatgg 476
           ||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||
Sbjct: 626 aacatgcatgtaacaattagaaagaggccatggatttgaaggagaacaagcggtacatgg 685

                    
Query: 477 tggggaggg 485
            ||||||||
Sbjct: 686 gggggaggg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 896
Length adjustment: 10
Effective length of query: 477
Effective length of database: 886
Effective search space:   422622
Effective search space used:   422622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)