BAC Information

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BAC

Clone NameMSMg01-502J12
Chromosome7 (Build37)
Map Location 96,529,043 - 96,529,660
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039756, Rab38, LOC100039924, LOC666598, EG621562, Tmem135, LOC100039969
Downstream geneFzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502J12.T7 (MSMg01no502_j12.b1)MSMg01-502J12.TJ (MSMg01no502_j12.g1)
ACCAG577911AG577912
length731744
length of high quality
(start - end)
304 (298 - 601)616 (71 - 686)
definitionCHROMAT_FILE: MSMg01no502_j12.b1 PHD_FILE: MSMg01no502_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:40 2005CHROMAT_FILE: MSMg01no502_j12.g1 PHD_FILE: MSMg01no502_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTTTCAAAGAGGATCCGCGGAATTCTTTGTTACATTGGATATTA
GCCCTCTATCAGATGTAGGATTGGTAAAGATCTTTTCCCAATCATTGGTT
GCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAAT
TTTATGAGGTCCCATTCTTGATCTTAGAACATAAGCTATTGGTGTTCTGT
TCAGAAACTTTCGCCCCTGTGCCTATGTGCTAGAGGGTCTTCCCCACTTT
CTCTTCTATTAAATTCAGTGTATCTGGTTTTATGTGGAGTTCTTTGATCG
ACTTGGACTTGAGCTTTGTACAGGGATAAGAATTGATAAATTTGCATTCT
TCTACATGTTGACAGTCAGTTGAACCAGCACCATTTGTTGAAAACGCTGT
TTTTTTTCCACTGGATGGTTTTAGCGCCTTTGTCAAAAATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTAC
CTGTCTGTCACTGTACCAGTACCATGCAGTTTTTATCACAATTGCTCTGT
AGTACAGCTTGAGGTCAGGGATTGTGATTCTCCCAGAGTTTCTTTTATTG
TTGAGAATAGTTTTCGCTATCCTGGGCTTTTTGTTATTCCAAATGAATTT
GAGAATTGCTCTTTCTAACTCTATGAAGAATTGAGTTGGAATTTTGATGG
GGATTGCATCAAATCTGTAGAATTGCTTTTG
CATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGATTTGGTGTGGGAAAGGCATTTTAGGG
TGGCATGTGTAATGTGTGAAAATTGGGTTGTATAAAAGTTAAATATGTGG
AAGTTAAGAGCCATCTGTGTCCACATTCCACTTGGCTGTCCCCAGGGCTT
GGTAATATAAATCTTCCATCCTAAACTCAGGGTCACCATAACAATGACTA
ATTTCTGTATACAACTTCACCACTTAGTAGTTTATGGAACGACTTACTAG
TTCTTCTATTTATTTCTTATCTCAGAAGGCTACTATATCCACAGTTTACT
ATTGAGCAAAGAAAGGGAACAGACATTTGTGTCTGTAAATTTACAGACAA
TGTTTCTCAGAAAGGCAAATTTACAATCTACTTCCCAAAAGATTTTCCAT
AGATTGTCAATGCCTTGGGACAGTAGTCCTCAAATCTTACTGTGAATCAT
AATCTTGTAAACATTTAAACACACACACACACACACACACACACACACAC
ACACACACACAAGGCTGTTCTAATATCCTATTTCTTATCTAGTAGGAACT
CTAATAACTTTCTAAGTACATTTGCTGGTGAGGTTATAAGATCCGCGCAT
CAAGAACTATTATTGATGACAAAGAGACTCCTGTCTCTTTGAGGAAAGTG
TCCCAGGTCAAATTGCAATGTGCCTTTTGTGAAACAGATACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_j12.g1 MSMg01no502_j12.g1 CHROMAT_FILE:
MSMg01no502_j12.g1 PHD_FILE: MSMg01no502_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:40 2005
         (616 letters)



>mm_chr7_96529013_96530028
          Length = 1016

 Score = 1156 bits (598), Expect = 0.0
 Identities = 613/618 (99%), Gaps = 2/618 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatttggtgtgggaaaggcattttagggtggcatgtgtaatgtgtgaaaattgggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cagatttggtgtgggaaaggcattttagggtggcatgtgtaatgtgtgaaaattgggttg 589

                                                                       
Query: 61  tataaaagttaaatatgtggaagttaagagccatctgtgtccacattccacttggctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tataaaagttaaatatgtggaagttaagagccatctgtgtccacattccacttggctgtc 529

                                                                       
Query: 121 cccagggcttggtaatataaatcttccatcctaaactcagggtcaccataacaatgacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cccagggcttggtaatataaatcttccatcctaaactcagggtcaccataacaatgacta 469

                                                                       
Query: 181 atttctgtatacaacttcaccacttagtagtttatggaacgacttactagttcttctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atttctgtatacaacttcaccacttagtagtttatggaacgacttactagttcttctatt 409

                                                                       
Query: 241 tatttcttatctcagaaggctactatatccacagtttactattgagcaaagaaagggaac 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tattccttatctcagaaggctactatatccacagtttactattgagcaaagaaagggaac 349

                                                                       
Query: 301 agacatttgtgtctgtaaatttacagacaatgtttctcagaaaggcaaatttacaatcta 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 348 agacatttgtgtctgtaaatttacagaaaatgtttctcagaaaggcaaatttacaatcta 289

                                                                       
Query: 361 cttcccaaaagattttccatagattgtcaatgccttgggacagtagtcctcaaatcttac 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttcccaaaagatcttccatagattgtcaatgccttgggacagtagtcctcaaatcttac 229

                                                                       
Query: 421 tgtgaatcataatcttgtaaacatttaaacacacacacacacacacacacacacacacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgtgaatcataatcttgtaaacatttaaacacacacacacacacacacacacacacacac 169

                                                                       
Query: 481 acacacacaca-a-ggctgttctaatatcctatttcttatctagtaggaactctaataac 538
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 acacacacacacacggctgttctaatatcctatttcttatctagtaggaactctaataac 109

                                                                       
Query: 539 tttctaagtacatttgctggtgaggttataagatccgcgcatcaagaactattattgatg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tttctaagtacatttgctggtgaggttataagatccgcgcatcaagaactattattgatg 49

                             
Query: 599 acaaagagactcctgtct 616
           ||||||||||||||||||
Sbjct: 48  acaaagagactcctgtct 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)