Query= MSMg01no502_j14.b1 MSMg01no502_j14.b1 CHROMAT_FILE:
MSMg01no502_j14.b1 PHD_FILE: MSMg01no502_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:41 2005
(539 letters)
>mm_chr7_50826849_50827786
Length = 938
Score = 955 bits (494), Expect = 0.0
Identities = 534/556 (96%), Gaps = 19/556 (3%)
Strand = Plus / Minus
Query: 1 ggtaaagatggccgcgataatctgtggggaagattgtctggacgaaggcaatgaatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ggtaaagatggccgcgataatctgtggggaagattgtctggacgaaggcaatgaatttga 753
Query: 61 ctcatgtaggagacctagtgaggtgaggggtaggggaagaaagtgttaaggctactacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ctcatgtaggagacctagtgaggtgaggggtaggggaagaaagtgttaaggctactacaa 693
Query: 121 gg------agagttgaaagcaaacagagaccaacagagcagaggactccatcagttctag 174
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggtagccaagagttgaaagcaaacagagaccaacagagcagaggactccatcagttctag 633
Query: 175 agaacagcatactcacgcctttggcccatttgttcatctagttaaggactca-------t 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 632 agaacagcatactcacgcctttggcccatttgttcatctagttaaggactcactgtcact 573
Query: 228 ---tgttgttaggggtggaagtttacttaatctagaaaagtattctctatctctgaacca 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cactgttgttaggggtggaagtttacttaatctagaaaagtattctctatctctgaacca 513
Query: 285 taacctaaaatcagtaaattttccttttttttttaaacatcaatttacacatatagtggc 344
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 512 taatctaaaatcagtaaattttcc-ttttttttaaaacatcaatttacacatatagtggc 454
Query: 345 ctttccttacttttctgatctcaactctatat-atgcagttataagcatctgcttctgta 403
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 453 ctttccttacttttctgatctcaactctatatga-gcagttataagcatctgcttctgta 395
Query: 404 gaaggctggagtttagtttccagcacccacagcaggaacctgttaactccagctccagag 463
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaaggctggagtttagtttccggcacccacagcaggaacctgttaactccagctccagag 335
Query: 464 gatccaacatcctcatctggcctctgtggaaaccctgatacatgtggcatttattcacac 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gatccaacatcctcatctggcctctgtggaaaccctgatacatgtggcatttattcacac 275
Query: 524 acacacacacacacac 539
||||||||||||||||
Sbjct: 274 acacacacacacacac 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_j14.g1 MSMg01no502_j14.g1 CHROMAT_FILE:
MSMg01no502_j14.g1 PHD_FILE: MSMg01no502_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:41 2005
(641 letters)
>mm_chr7_50709054_50710094
Length = 1041
Score = 1123 bits (581), Expect = 0.0
Identities = 626/641 (97%)
Strand = Plus / Plus
Query: 1 cctaaactgaggccaagtgctgatcccaagaacaaaccaaagagacaggtcctggtaggg 60
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 201 cctaaactgaggccaagtgctgaaaccaagaagaaaccaaagagacaggtcctggtaggg 260
Query: 61 ttggggtccaggtatccctggtatcagatgttggcatcctggcatttagcaggtccagca 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggggtccaggtatccctgttatcagatgttggcatcctggcatttagcaggtccagca 320
Query: 121 atgccagggcttcctcctcatgtttcagcttgagtcctgtgcccatcccggaaccagtcc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataccagggcttcctcctcatgtttcagcttgagtcctgtgcccatcccggaaccagtcc 380
Query: 181 gtggagtaaggagggggtgtggatagaatgttcgtgctggctttgcttttgttcccctgt 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggagtaaggagggggcgtggatagaatgttcgtgctggctttgcttttgttcccctgg 440
Query: 241 ttttctgctagggctggcacatgtcctggctgccttagaagtaggtaaatgaatgactgt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttctgctagggctggcacatgtcctggctgccttagaagtaggtaaatgaatgactgt 500
Query: 301 acagaggtcaacaggaatgccaggctgctccacatccctgcacacgtgactgcttattgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagaggtcaacaggaatgccaggctgctccacatccctgcacacgtgactgcttattgt 560
Query: 361 ttccgtcccagggaggaaatcattctagaccaggaatcggcaatctatagctccaggcag 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 ctccgtcccagggaggaaatcattctagaccaggaatcggcaatccatagctccaggcag 620
Query: 421 catctgctttgccaataaagttttattggtacagccatatgtgttcatttacatgtcacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catctgctttgccaataaagttttattggtacagccatatgtgttcatttacatgtcacc 680
Query: 481 tatagcttgagtgctatgtgacctgcttgaacagcttggaaagcctcaagtatttcttgt 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 tatagcttgagtgctgtgtgacctgcttgaacagcttggaaagcctcaagtatttcctgt 740
Query: 541 tttgcctgctgagaactgttaccgataagaagtctaaacgggctggcacaagcccggcca 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 tttgcctgctgagaactgttaccgataagaagtctaaatgggctggcacaagcccggcca 800
Query: 601 ccatcacaaagcctctcctctctctccctgttaggctattg 641
||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 801 ccatcacaaagcccctcctctctctccctgctaggctattg 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
