Query= MSMg01no502_l19.b1 MSMg01no502_l19.b1 CHROMAT_FILE:
MSMg01no502_l19.b1 PHD_FILE: MSMg01no502_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:51 2005
(704 letters)
>mm_chr7_136029891_136030994
Length = 1104
Score = 1323 bits (684), Expect = 0.0
Identities = 696/700 (99%)
Strand = Plus / Minus
Query: 5 gaattctttatggatgttttatcaggtaaatataattaattaaaccattggtgattaaac 64
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1013 gaattctttatggaggttttatcaggtaaatataattaattaagccattggtgattaaac 954
Query: 65 tcaacctgcagccaatttactctccttaaaagtacaagagaagcagaaagccaaccctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tcaacctgcagccaatttactctccttaaaagtacaagagaagcagaaagccaaccctcc 894
Query: 125 catcatgctttggtcctgttagtgaccagctctcatccaaaagctactaagatggaccga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 catcatgctttggtcctgttagtgaccagctctcatccaaaagctactaagatggaccga 834
Query: 185 cctcccctcccccaatcacaagtcaccttattagtacacagagaacatttgttatcctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 cctcccctcccccaatcacaagtcaccttattagtacacagagaacatttgttatcctgg 774
Query: 245 ccattccatgtaatttatgatttctatgacaaaacctaaggacaaagacaaatacatgtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ccattccatgtaatttatgatttctatgacaaaacctaaggacaaagacaaatacatgtt 714
Query: 305 tctttttatgcataggaacccatgaagagcaaattgcatcatgagacacatagcctctta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tctttttatgcataggaacccatgaagagcaaattgcatcatgagacacatagcctctta 654
Query: 365 gatacagagacattcatgaggacctggcacataacacagcttcatttaggcatctaaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gatacagagacattcatgaggacctggcacataacacagcttcatttaggcatctaaaaa 594
Query: 425 cctcttgcgtcagtaaagctgctaatcaggattgctacactcaagtgaaaagactgggaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cctcttgcgtcagtaaagctgctaatcaggattgctacactcaagtgaaaagactgggaa 534
Query: 485 cagagacttagtaagtacagagctgatggggctggagaggtggctcagtggttgactatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 533 cagagacttagtaagtacagagctgatggggctggagaggtggctcagtggttgagtatt 474
Query: 545 ggactgctcttacagaaggcccaagataagtcctgaacactcatgtcagaagctagcaag 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 473 ggactgctcttacagaaggcccaagataagtcctgaacactcatgtcagaagctcgcaag 414
Query: 605 ccacctgtaacttcagctctgggagatccagcgccctcttctggatcccatcagcacctg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccacctgtaacttcagctctgggagatccagcgccctcttctggatcccatcagcacctg 354
Query: 665 tattcacatgtacaaatctatacccacataattaaaacaa 704
||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tattcacatgtacaaatctatacccacataattaaaacaa 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no502_l19.g1 MSMg01no502_l19.g1 CHROMAT_FILE:
MSMg01no502_l19.g1 PHD_FILE: MSMg01no502_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:51 2005
(584 letters)
>mm_chr7_135882122_135883103
Length = 982
Score = 998 bits (516), Expect = 0.0
Identities = 561/578 (97%), Gaps = 6/578 (1%)
Strand = Plus / Plus
Query: 9 gtcattggaacttaaccctttaagtcccaaacctttaactatggagagattttttttccc 68
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 209 gtcattggaacttaaccctttaagtcccaaacctttaactacggagagattttttttccc 268
Query: 69 cctaaaaatttatctacacatttgcactttcacccagtacagaactgaaccctggcttga 128
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 c-taaaaatttatctacacatttgcactttcacccagtacagaactgaaccctggcttga 327
Query: 129 catttgggaaccattgttagtctcgacatgccagttgttgggtccaatattttgaacttc 188
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catttgggaatcattgttagtctcgacatgccagttgttgggtccaatattttgaacttc 387
Query: 189 aattactagcacttagcgaagggctctgccttccaaatgacagaatcacaggtagcattt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 388 aattactagcacttagcgaagggctctgccttccaaatgacagaatcacaggtagcagct 447
Query: 249 tatttcacac--cctttgataaccaccctagatggctaggtctgaatctgcctctctcca 306
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 448 ta---cacacaccctttgataaccaccctagatggctaggtttgaatctgcctctttcca 504
Query: 307 cctgcactgtactcagaccactcatcaggccaggcacgcattctactactgagctataat 366
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 cctgcactgtactcagaccattcatcaggccaggcacacattctactactgagctataat 564
Query: 367 accccaagcccgtggtttactctttcgcgggcttgcacacccctgcccctgtttaagaca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 accccaagcccgtggtttactctttcgcgggcttgcacacccctgcccctgttgaagaca 624
Query: 427 ctgtgtgttcactggctatataatcgtcttgtctacccagcccttctatctgccggcttt 486
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 ctgtgtgttcactggctatataatcgtcatgtctacccagcccttctatctgccggcttt 684
Query: 487 agtttcaccctgggaaactacctgattagttagaattctaggtaaaatgaatccgatccg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtttcaccctgggaaactacctgattagttagaattctaggtaaaatgaatccgatccg 744
Query: 547 gtggaagcgttactacagaaaacacattccacggagac 584
|||| |||||||||||||||||||||||||||||||||
Sbjct: 745 gtgggagcgttactacagaaaacacattccacggagac 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 982
Length adjustment: 10
Effective length of query: 574
Effective length of database: 972
Effective search space: 557928
Effective search space used: 557928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
