Query= MSMg01no503_j16.b1 MSMg01no503_j16.b1 CHROMAT_FILE:
MSMg01no503_j16.b1 PHD_FILE: MSMg01no503_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:56 2005
(437 letters)
>mm_chr7_142949923_142950760
Length = 838
Score = 787 bits (407), Expect = 0.0
Identities = 431/439 (98%), Gaps = 3/439 (0%)
Strand = Plus / Plus
Query: 1 cctgtggagccggggtggggagcagtggcagaggtgtgaagtctgaatataacagtcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtggagccggggtggggagcagtggcagaggtgtgaagtctgaatataacagtcatt 260
Query: 61 ttcttctctcttccagcaagaggggttcagaagcgccctgggggtggggtgtagggtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ttcttctctcttccagcaagaggggttcagaagcgccctgggggtggggcgtagggtagg 320
Query: 121 tagtctcatgaatttagttttgggcgactttcagagttttttttttttttt-aaggggga 179
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cagtctcatgaatttagttttgggcgactttcagagttttttttttttttttaaggggga 380
Query: 180 gggggcatactccataactgcaaaattgtctgaggagcagtcctgtccactgaggggagt 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggcatactccataactgcaaaagtgtctgaggagcagtcctgtccactgaggggagt 440
Query: 240 ggca-tcctgtcttctctggcactcctttgtattaccaagaatgagctgtttcttcagac 298
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagtc-tgacttctctggcactcctttgtattaccaagaatgagctgtttcttcagac 499
Query: 299 atgtgctaccaggtccatgtggggtttgaacttggggcttcatgcaggctaggcaaccat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgtgctaccaggtccatgtggggtttgaacttggggcttcatgcaggctaggcaaccat 559
Query: 359 tccacactcagtcctttctttatgattcttcagtgttttgatccccaaaccaataatctc 418
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 tccacactcagtcctttctttatgattcttcagtgtttcgatccccaaaccaataatctc 619
Query: 419 accctttttaaaaaggaga 437
|||||||||||||||||||
Sbjct: 620 accctttttaaaaaggaga 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 838
Length adjustment: 9
Effective length of query: 428
Effective length of database: 829
Effective search space: 354812
Effective search space used: 354812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_j16.g1 MSMg01no503_j16.g1 CHROMAT_FILE:
MSMg01no503_j16.g1 PHD_FILE: MSMg01no503_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:56 2005
(504 letters)
>mm_chr7_143093742_143094645
Length = 904
Score = 928 bits (480), Expect = 0.0
Identities = 498/504 (98%)
Strand = Plus / Minus
Query: 1 caacttctagaattatctgaggcctgaggaagagagtagagtcctgcacttttctccatc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 704 caacttctagaattatctgaggcctgaggaagagagtagagccctgcacttttctccatc 645
Query: 61 tgtatgcctgggacattcttggagcctaactcctgcctttctaggctaagccagccattg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 644 tgtatgcctgggacattcttggagcctaactcctgcctttgtaggctaagccagccattg 585
Query: 121 gtcccagtgcctggcaggcctggcttctcaacaaaactgccgccattgtgtcccagagcc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 584 gtcccagtgcctggcaggcctggcttctcaacaaaactgcctccattgtgtcccagagcc 525
Query: 181 ttgggaaacatacatgtctgcaactcctttccatgtggagagctggtatctaccccttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttgggaaacatacatgtctgcaactcctttccatgtggagagctggtatctaccccttct 465
Query: 241 tccttctccccattactgcctgggattcggccacaattggaagcaagtcttggcagctca 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tccagctccccattactgcctgggattcggccacaattggaagcaagtcttggcagctca 405
Query: 301 attttcaacttccgttccctttcccccaacgcctgaaatgcattaacggatatcacaggt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 attttcaacttccgttccctttcccccaatgcctgaaatgcattaacggatatcacaggt 345
Query: 361 gacattcatctattttggaacaatgattcggattgaaagctctcacccccaatgtaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gacattcatctattttggaacaatgattcggattgaaagctctcacccccaatgtaaaca 285
Query: 421 actgcagagcatgtttccatggaagtcttctgagaaattagctgattctgcagcggcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 actgcagagcatgtttccatggaagtcttctgagaaattagctgattctgcagcggcagc 225
Query: 481 actgatttatgacaacagtggtgc 504
||||||||||||||||||||||||
Sbjct: 224 actgatttatgacaacagtggtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
