Query= MSMg01no505_a03.b1 MSMg01no505_a03.b1 CHROMAT_FILE:
MSMg01no505_a03.b1 PHD_FILE: MSMg01no505_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:49 2005
(695 letters)
>mm_chr7_125487059_125488153
Length = 1095
Score = 1108 bits (573), Expect = 0.0
Identities = 671/727 (92%), Gaps = 38/727 (5%)
Strand = Plus / Plus
Query: 5 gaattcaaactttacctttataatatcagaagatgaaatcctcatggttctccacagagg 64
||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 171 gaattcaaactggagctttataatatcagaagatgaaatcctcatggttcttcacagagg 230
Query: 65 aaaaaatacatacatataagtgctcatcagaagatgtctatagaacatgcatacactcaa 124
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct: 231 aaaaaatacatacatataactgctcatcagaagatgtctatagaacacacatacacacaa 290
Query: 125 gatgaaaggcagagcatttcactgtgaagaacaagtcagctgaacacaaatggagaaaat 184
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 291 gatgaaagacaaagcatttcactgtgaagaacgagtcagctgaacacaaatggagaaaat 350
Query: 185 aatgcaaggatcaagggagaaaagctgtaagatgaaaagaaaatgagtagtgaaatggta 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agtgcaaggatcaagggagaaaagctgtaagatgaaaagaaaatgagtagtgaaatggta 410
Query: 245 atcacttgatcaataatcactttacatgtgtaagaagtacattatccagtcaaaaggcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcacttgatcaataatcactttacatgtgtaagaagtacattatccagtcaaaaggcag 470
Query: 305 attggcagaataaatttacaaaaatgtgatccaactacctgctaaccacaagaaacccat 364
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 471 attggcagaataaatttacaaaaatgtgatccaactacctactaatcacaagaaacccat 530
Query: 365 tttgggccacagacacgatgaggtagaaagtgaaaagaatattccatgcaagaagaggca 424
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 531 tttgggccacagacacgatgaggtagaaagtgaaaagaata--ccatgcaagaagaggca 588
Query: 425 gaggtgaggagcatggttataaataagccagtcaccaaaggacactcactgtgtgagtct 484
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 589 gaggagaggagcatggttataaataagccagtcaccaaaggacactaactgtgtgagtct 648
Query: 485 acttagtgagggacagcctgatacacagaaagagaaagcaagactaagacagaagacatc 544
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 649 acttagtgagggacagcctgatgcacagaaagagaaagcaagaataagacagaagacatc 708
Query: 545 cagtgttgagctctgacctccacatgcatgta-acac----------------------- 580
|||||||||||||||||||||||||||||||| ||||
Sbjct: 709 cagtgttgagctctgacctccacatgcatgtacacacatacagacacacacacatatgca 768
Query: 581 ------------gtgtatatagtacatacaactaggtaacatgtatgtacaaggcacaca 628
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgcatgttacatgtgtatatagtacatacaactaggtaacatgtatgtacaaggcacaca 828
Query: 629 caaaattaaaagaataagctgggtgtggtggcagccatttttaataacagcataatggga 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 caaaattaaaagaataagctgggtgtggtggcagccatttttaataacagcataatggga 888
Query: 689 agctgaa 695
|||||||
Sbjct: 889 agctgaa 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_a03.g1 MSMg01no505_a03.g1 CHROMAT_FILE:
MSMg01no505_a03.g1 PHD_FILE: MSMg01no505_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:49 2005
(244 letters)
>mm_chr7_125640811_125641454
Length = 644
Score = 426 bits (220), Expect = e-124
Identities = 238/244 (97%)
Strand = Plus / Minus
Query: 1 ttagttatcagggagtgggctctttgaaaggattagaaggattaggaggtgtgtatgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttagttatcagggagtgggctctttgaaaggattagaaggattaggaggtgtgtatgtaa 438
Query: 61 cctaagtactgacggaacagggagctttggggaggagaggagagagcacaggagagatat 120
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 437 cctaagtactgacagaacagggagcttcagggaggagaggagagagcacaggagagatat 378
Query: 121 acgagtgtgtggttctttctgcaggatcttagagattacagatgttctagggggcttatt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 377 ccgagtgtgtggctctttctgcaggatcttagagattacagatgttctagggggtttatt 318
Query: 181 ctgaacaaaaaagaagtgtgtcaagtttcagaagagagcccatgtggttttctcaggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgaacaaaaaagaagtgtgtcaagtttcagaagagagcccatgtggttttctcaggttg 258
Query: 241 taga 244
||||
Sbjct: 257 taga 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
