Query= MSMg01no506_m13.b1 MSMg01no506_m13.b1 CHROMAT_FILE:
MSMg01no506_m13.b1 PHD_FILE: MSMg01no506_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:06 2005
(330 letters)
>mm_chr7_49592618_49593347
Length = 730
Score = 124 bits (64), Expect = 8e-33
Identities = 220/276 (79%), Gaps = 24/276 (8%)
Strand = Plus / Plus
Query: 11 ttatattcataaaatcccttgtgtacttcaatttag-ttaatactctgaatgatttcaaa 69
|||| ||||||| |||||||| ||||| || ||| | |||| | |||| ||||||||| |
Sbjct: 211 ttattttcataatatcccttgggtactccagttt-gtttaacaatctgtatgatttcata 269
Query: 70 ctaacaaatgccattatatttttgaagtttaagtccttcactagtattatgttgttacat 129
|||| ||||||||||| ||| || ||| |||| | |||||||||||||||||||||||||
Sbjct: 270 ctaataaatgccattacattcttaaagcttaaattcttcactagtattatgttgttacat 329
Query: 130 ttagctatggcattatttgtttatgtacagggaga-gaactattttttagttattaaa-a 187
|||||||||||||| |||| | || ||| ||| || ||| | || || ||||||| |
Sbjct: 330 ttagctatggcatt---tgttaacata-agg-agaaga-ctaatatt-agatattaaaga 382
Query: 188 atttgttttgaatattctgttct--taaacaattgtg-a-gttttaccttgagtat--aa 241
|| |||| || || |||| || || ||| || || | ||||| |||||| || ||
Sbjct: 383 ataggttt-gagtactctg--ctgctataca-tt-tgcacgttttcccttga--attaaa 435
Query: 242 aaacatatgcaccttagtttataatgccatattttt 277
||||||||||||| |||||||| ||||| ||||||
Sbjct: 436 aaacatatgcaccacagtttatattgccaaattttt 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_m13.g1 MSMg01no506_m13.g1 CHROMAT_FILE:
MSMg01no506_m13.g1 PHD_FILE: MSMg01no506_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:06 2005
(672 letters)
>mm_chr7_49554140_49555210
Length = 1071
Score = 1268 bits (656), Expect = 0.0
Identities = 668/672 (99%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 1 atgatcattaaacaaacaaacaaacaaaaaaggtatcaaaggagaaatttgattcttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatcattaaacaaacaaacaaacaaaaaaggtatcaaaggagaaatttgattcttgtg 260
Query: 61 gaaaaaaaaaagctcaataaatgttcactcaaaaatataaaacagagacaacaatccctt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaaaaaa-gctcaataaatgttcactcaaaaatataaaacagagacaacaatccctt 319
Query: 121 gatgaggtgatagtttttaaaaatacacaaaggattgatgtaatagaaatatggcattat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatgaggtgatagtttttaaaaatacacaaaggattgatgtaatagaaatatggcattat 379
Query: 181 acactgaagtgaatatacttataatacaaggtaaaactcacaaatctatgagagcagagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acactgaagtgaatatacttataatacaaggtaaaactcacaaatctatgagagcagagt 439
Query: 241 actcaaaaattatttttaatacctagtaatagttctctctctatgtattaacaaatccca 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actcaaaaagtatttttaatacctagtaatagttctctctctatgtattaacaaatccca 499
Query: 301 tagctaaatgtaacaacacaatactagtgaaggatttgagcttcaagaatgtaacagcat 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 tagctaaatgtaacaacacaatactagtaaaggatttgagcttcaagaatgtaacagcat 559
Query: 361 ttatttttatgaaattatttagactgttaaccaaattacagtaaccaaggatcttatgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttatttttatgaaattatttagactgttaaccaaattacagtaaccaaggatcttatgaa 619
Query: 421 aacaaataaatatgggtacaaaatcagagaacaccatttaagaaaagaactttaaaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 aacaaataaatatgggtacaaaatcagagaacaccatttaagaaaagtactttaaaaaat 679
Query: 481 actgacagtattatacaaaacatatgtacagaattagatattttccatagggtgatgtca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actgacagtattatacaaaacatatgtacagaattagatattttccatagggtgatgtca 739
Query: 541 gaaacaaattgcaattgtacaggattgttttgaaatgttatgactcataagaaagatgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaaacaaattgcaattgtacaggattgttttgaaatgttatgactcataagaaagatgaa 799
Query: 601 acagagtcacaacctgtggtaaagcttgcaaaatcagaggaaaagcattgggcttttgca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acagagtcacaacctgtggtaaagcttgcaaaatcagaggaaaagcattgggcttttgca 859
Query: 661 attttagtcacc 672
||||||||||||
Sbjct: 860 attttagtcacc 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
