Query= MSMg01no506_m23.b1 MSMg01no506_m23.b1 CHROMAT_FILE:
MSMg01no506_m23.b1 PHD_FILE: MSMg01no506_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:08 2005
(678 letters)
>mm_chr7_76983534_76984611
Length = 1078
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%)
Strand = Plus / Minus
Query: 114 catttcatggcttccaaggatgctgtggaagaggactttccatcacggaggatctccagt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 catttcatggcttccaaggatgctgtggaagaggactttccatcacggaggatctccagt 1019
Query: 174 aggctgaccacctgtctagaagtacaaaacatcacctttgttatcgtttcattggccacc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 aggctgaccacctgtctagaagtacaaaacatcacctttgttatcgtttcattggccacc 959
Query: 234 actgccatggggtctcaactcactaaagagtctgagaaatgtattttttattgcaggctc 293
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 958 actgccatggggtctcaactcactaaagagtctgagaaatgtattttcaattgcaggctc 899
Query: 294 aagaagagaaaaacagctttctagaaagctccttctagccacgggactagttaagacttt 353
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 aggaagagaaaaacagctttctagaaagctccttctagccacgggactagttaagacttt 839
Query: 354 tcttattcattaaagaaatgagtgcaactcttgtttggaagcccagagcttcatcaaaca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tcttattcattaaagaaatgagtgcaactcttgtttggaagcccagagcttcatcaaaca 779
Query: 414 tccttataacattgctaagctaagagtgattacattactataagtttaattttgcttttg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tccttataacattgctaagctaagagtgattacattactataagtttaattttgcttttg 719
Query: 474 agtttttttcccctttcagttttaagtgttggtctcatagtatgaaaatattccattgtt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agtttttttcccctttcagttttaagtgttggtctcatagtatgaaaatattccattgtt 659
Query: 534 ataaaatactctcaaattaattcactcatcatttactcctttaacaaatgtttgcctagg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ataaaatactctcaaattaattcactcatcatttactcctttaacaaatgtttgcctagg 599
Query: 594 ccttgaagtaggccagaattagtgcaaaatacttttgttagtcactacctttgagttacc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ccttgaagtaggccagaattagtgcaaaatacttttgttagtcactacctttgagttacc 539
Query: 654 ctatctctaggtattttcttttaac 678
|||||||||||||||||||||||||
Sbjct: 538 ctatctctaggtattttcttttaac 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_m23.g1 MSMg01no506_m23.g1 CHROMAT_FILE:
MSMg01no506_m23.g1 PHD_FILE: MSMg01no506_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:08 2005
(588 letters)
>mm_chr7_76887646_76888635
Length = 990
Score = 1065 bits (551), Expect = 0.0
Identities = 585/607 (96%), Gaps = 19/607 (3%)
Strand = Plus / Plus
Query: 1 attgcaaagagcaggaactacttttataattattctgtccacttgggcaaaaatacacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgcaaagagcaggaactacttttataattattctgtccacttgggcaaaaatacacta 260
Query: 61 ttcacattttaactctggccttggctgtaagccagaaagtctgtattcaggatgtggg-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcacattttaactctggccttggctgtaagccagaaagtctgtattcaggatgtgggga 320
Query: 119 gagagagaaaggatccttcctgtataactgatggctatagcccttgaccctttctttgat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagagaaaggatccttcctgtataactgatggctatagcccttgaccctttctttgat 380
Query: 179 taacagtaaggcttgctgactgatttaacgtggtccatttcatgcagatggttcctacag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacagtaaggcttgctgactgatttaacgtggtccatttcatgcagatggttcctacag 440
Query: 239 ccttttaaaccatcctttcaggtgatctatggaaagaggagcaatctccagaaccagcct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttttaaaccatcctttcaggtgatctatggaaagaggagcaatctccagaaccagcct 500
Query: 299 ttgctccacttgttaacaacttctttttcagacaagatgcagtttgaaataaatgagtat 358
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctccacttgttaacaacttgtttttcagacaagatgcagtttgaaataaatgagtat 560
Query: 359 ttaaaaactcatggtaggagctagcttgaatatgtatttaacaattaataataataataa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaaaactcatggtaggagctagcttgaatatgtatttaacaattaataataataataa 620
Query: 419 ta---gaattctgaacgatgttaattttccatttcctaaggcttccatgtaaagcaccac 475
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatagaattctgaacgatgttaattttccatttcctaaggcttccatgtaaagcaccac 680
Query: 476 aaactagatgaataaaaataacaaaagtttatgagcacatttctggaggctataaaacac 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactagatgaataaaaataacaaaagtttatgagcacatttctggaggctataaaacac 740
Query: 536 acacacacacacacacacac--------------tcaggtaaatgtatgcatacatgtaa 581
|||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 741 acacacacacacacacacacacacacacacacactcaggcaaatgtatgcatacatgtaa 800
Query: 582 gtgtaca 588
| |||||
Sbjct: 801 gcgtaca 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space: 566440
Effective search space used: 566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
