Query= MSMg01no507_f06.b1 MSMg01no507_f06.b1 CHROMAT_FILE:
MSMg01no507_f06.b1 PHD_FILE: MSMg01no507_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:50 2005
(675 letters)
>mm_chr7_124212894_124213968
Length = 1075
Score = 1183 bits (612), Expect = 0.0
Identities = 657/672 (97%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgtttagctctgtaccccatttttaatggggttatttgaatttctggagttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgtaccccatttttaatggggttatttgaatttctggagttc 264
Query: 65 agcttcttgagctctttgtatatattggatattcccatgaacatataagaagcctacaga 124
| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 265 aacttcttgagctctttgtatatattggatatttccatgaacatacaaaaagcctacaga 324
Query: 125 actctcaacagtcttatatacagtggctaaatgcaatagccttgaaatctatgttatttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actctcaacagtcttatatacagtggctaaatgcaatagccttgaaatctatgttatttg 384
Query: 185 tcttctcatgtgtaaatgtgtgtggtgtgaatgtgtgtatgcatgttcacatcaatgtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttctcatgtgtaaatgtgtgtggtgtgaatgtgtgtatgcatgttcacatcaatgtga 444
Query: 245 gtgtgcacgtgtgtatgcacgtatggatgcctgaggttgacttgaggaattttcttctac 304
||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct: 445 gtgtgtacgtgtgtatgcatatatggatgcctgaggttgatttgaggaatcttcttctac 504
Query: 305 ttttctccaccttattcacagaggcaaggtgagcccaatgctcactaatatggtcagtct 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 ttttctccaccttattcacagaggcaaggtgagcccagtgctcactaatatggtcagtct 564
Query: 365 ggcaagttagtttgctccaaggatctcatgggcatacctcagtcatgctggggttacagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcaagttagtttgctccaaggatctcatgggcatacctcagtcatgctggggttacagg 624
Query: 425 catcccattgccaccctcactgagcctttatgtggctcaaaaggtttgaactcttg-tcc 483
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 625 catcccattgccgccctcactgagcctttatgtggctcaaaaggtttgaactctggatct 684
Query: 484 tcatgtttgcaaggcattctagtttcatttctgttgctggggaaaaatactatgacccaa 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcatgtttgcaaggcgttctagtttcatttctgttgctggggaaaaatactatgacccaa 744
Query: 544 agcaacttttgggaagaaagggtttatttggcttacaattccagatttcaggctgttatt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agcaacttttgggaagaaagggtttatttggcttacaattccagatttcaggctgttatt 804
Query: 604 tcagggaaatcaaggcaggatcttaaatcatccgatcatagtcgagaacaaagaggaaca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcagggaaatcaaggcaggatcttaaatcatccgatcatagtcgagaacaaagaggaaca 864
Query: 664 cctggatctttc 675
||||||||||||
Sbjct: 865 cctggatctttc 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_f06.g1 MSMg01no507_f06.g1 CHROMAT_FILE:
MSMg01no507_f06.g1 PHD_FILE: MSMg01no507_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:50 2005
(578 letters)
>mm_chr7_124371568_124372540
Length = 973
Score = 1056 bits (546), Expect = 0.0
Identities = 568/578 (98%), Gaps = 5/578 (0%)
Strand = Plus / Minus
Query: 1 cactaccgctccatatactttggtattgtttgttcaccaacatcttgcttaacttgagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cactaccgctccatatactttggtattgtttgttcaccaacatcttgcttaacttgagca 714
Query: 61 tgaggcatacataaacaataataaacattgattcttaccttccaggtcacttcttacttc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgaggcatacataaacaatgataaacattgattcttaccttccaggtcacttcttacttc 654
Query: 121 ttattcccactctctggggagtgaatgtttctcagagctcccgaaagctctcctcccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttattcccactctctggggagtgaatgtttctcagagctcccgaaagctctcctcccagc 594
Query: 181 agtctttgctcagtcaggctctaagacacagaattgaggaagccagtaagttctggaagt 240
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 593 agactttgctcagtcaggctctaagacacagaactgaggaagccagtaagttctggaagt 534
Query: 241 aaaactttttttttttttggatttcatctctgctttgagtgagtgacagctcactagggg 300
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 533 acaac-----ttttttttggattccatctctgctttgagtgagtgacagctcactagggg 479
Query: 301 agatacgtcctcagccaacaggagcataagtggcagaaaggaatgtttggaatgaagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agatacgtcctcagccaacaggagcataagtggcagaaaggaatgtttggaatgaagcag 419
Query: 361 aaaagattttcttcttcccatagtagaaaatgaacagcaaaagagactactgtttgctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaaagattttcttcttcccatagtagaaaatgaacagcaaaagagactactgtttgctgt 359
Query: 421 tcaagaggtaagctatgtatgtcgtcaccaaaggcttcatttctctttataaatgcaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcaagaggtaagctatgtatgtcgtcaccaaaggcttcatttctctttataaatgcaaag 299
Query: 481 aaaaataacaatttctaaactgcttcattgatcaaagaataactgctggctacaaacatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaaaataacaatttctaaactgcttcattgatcaaagaataactgctggctacaaacatt 239
Query: 541 tattcataccacaaaaggcacatgctccttcctcttaa 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tattcataccacaaaaggcacatgctccttcctcttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 973
Length adjustment: 10
Effective length of query: 568
Effective length of database: 963
Effective search space: 546984
Effective search space used: 546984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
