BAC Information

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BAC

Clone NameMSMg01-507I09
Chromosome7 (Build37)
Map Location 31,852,995 - 31,853,609
singlet/doubletsinglet
Overlap geneLgi4
Upstream geneZfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1
Downstream geneFxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507I09.T7 (MSMg01no507_i09.b1)MSMg01-507I09.TJ (MSMg01no507_i09.g1)
ACCAG581653AG581654
length783779
length of high quality
(start - end)		604 (74 - 677)610 (74 - 683)
definitionCHROMAT_FILE: MSMg01no507_i09.b1 PHD_FILE: MSMg01no507_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:06 2005CHROMAT_FILE: MSMg01no507_i09.g1 PHD_FILE: MSMg01no507_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCAGGAATGGTTTCTACCACTGAGCCTCACCCACGACGAATCCATGC
TGAATTCTGGGCAAGCAGACAGCACTAAGCCACGCCCCCAACCCCTTTCT
AGTGAATTCCGGGCTTAAGCATTGCAGCTGAGCCAGGCTCCCAACTCTCA
CTGGTGATTCTAAGTGAGAGCTTACCTACTAAACTACAGCCCTTGGATTT
ATGAGGCAGAGACTCAGCTAGAATCTTAATATATAGTCCAGGCTGGCTTC
AAGCCAACATGACCTGCTCCAAGATTCTGAATTTACTCTGCTAAGCTTGG
CCCTGTCTTTAGAACATTCCAGGATGTTAACTCCATCTACACACTTCCTG
TCAGGACAGGTTAAGCTAGTGTTAAGACCTTCTCATCGTCTCCAGGATTA
TCGTTTCAGAGTAAGGCACAGTCAGGGACAGACCGCCCCACCCCACAACT
CAGTTATTCAAGGGGTCTCCAGGAGGGAGCAATGGAGATTAGAATGGGAA
TCAGGGATCACAGATACGAGAGTAGAGAAGATGGAAGCTGGGTCAGGGTG
TAGCTGGAGCATATGGGATAAACACATAACGTATGACTGCTAAGACTGAC
AAACCATTGACGGGCATTCTGTGTGACCTGTGAGGCAGAGAGGAAGGTCT
ATAACAATGCCCCGTTCCAAGCACACATATGTTACCTGTAAGTTAAGAAA
GTTACAGGCATAATGTTGGTGTCACAAAAGCCT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCGAATTCCAGGGCAGCCTGGTCTACATATCAACA
AAAACAAGAAGGCTGCAATGGCTCTCTAAGCATCAACTGGCAGTCAGGGG
CAGTTACCCTGACCTCAGTGACTTCAGAAATCATTTCTCTCAGATCCTCT
AAAGACTTCCCATGATTCCATTACAGCACATAGACATGGGGCACTGAACA
GAGCTGCAGGCATTTATTAGAATCAGCCTAAGAGACTAAAGGATGAAGGC
ACAGGTGTCAGAAATCCAACTTAAGGATAGTAAGACGACAGGTTAGCAAG
ATGGGACTTGGATCAGACACATTGCAAAGATAGGTTGCCTATAACCCATT
AACTTCTAATGGGTTCATTTCTTAGAAAACTTATCCAGAATATTTATCAA
GACTTCTTTGGTATAATATGACTTGCATTCTGGGCTGAAGAGTATAGCTG
CCTGGAAAACAAACAGACAGACAGGGAGAGAGGTGAATATAGGCAAGGTG
CAAGACCTCAGCAGGACTCCCCATCCACCCACAAAGAGACTGCTCCTCAT
CCACAGGAAAGAAAATCCCATGCAGTGATTCAGGTCTACAGCAACAGACT
CTCCCTCAAGGGAACTGGAGCCCACCCACAACCTTCATGAGGAAGCCTGA
AAGCCACCATAGCCAGGGAAGAATGGGAGAAAGTTCCAGAAGGCATGATG
GGGGCTTTATCTTAAGAGAGACAAGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_i09.b1 MSMg01no507_i09.b1 CHROMAT_FILE:
MSMg01no507_i09.b1 PHD_FILE: MSMg01no507_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:06 2005
         (604 letters)



>mm_chr7_31852806_31853809
          Length = 1004

 Score = 1087 bits (562), Expect = 0.0
 Identities = 597/616 (96%), Gaps = 13/616 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcctcacccacgacgaatccatgctgaattctgggcaagcagacagcactaagccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgagcctcacccacgacgaatccatgctgaattctgggcaagcagacagcactaagccac 249

                                                                       
Query: 61  gcccccaacccctttctagtgaattccgggcttaagcattgcagctgagccaggctccca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 250 gcccccaacccctttctagtgaattccgggcttaagcactgcagctgagccaggctccca 309

                                                                       
Query: 121 actctcactggtgattctaagtgagagcttacctactaaactacagcccttggatttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 actctcactggtgattctaagtgagagcttacctactaaactacagcccttggatttatg 369

                                                                       
Query: 181 aggcagagactcagctagaatcttaatatatagtccaggctggcttcaagccaacatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aggcagagactcagctagaatcttaatatatagtccaggctggcttcaagccaacatgac 429

                                                                       
Query: 241 ctgctccaagattctgaatttactctgctaagcttggccctgtctttagaacattccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctgctccaagattctgaatttactctgctaagcttggccctgtctttagaacattccagg 489

                                                                       
Query: 301 atgttaactccatctacacacttcctgtcaggacaggttaagctagtgttaagaccttct 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 490 atgttaactccatctacacacttcctgtcgggacaggttaagctagtgttaagaccttct 549

                                                                       
Query: 361 catcgtctccaggattatcgtttcagagtaaggcacagtcagggacagaccgc------- 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |       
Sbjct: 550 catcgtctccaggattatcgtttcagagtaaggcacagtcagggacagacc-ctcccccc 608

                                                                       
Query: 414 -----cccaccccacaactcagttattcaaggggtctccaggagggagcaatggagatta 468
                ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 609 ccccacccaccccacaactcagttattcaaggggtctccaggagggagcagtggagatta 668

                                                                       
Query: 469 gaatgggaatcagggatcacagatacgagagtagagaagatggaagctgggtcagggtgt 528
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 669 gaatgggaatcagggatcacagatacaagagtagagaaggtggaagctgggtcagggtgt 728

                                                                       
Query: 529 agctggagcatatgggataaacacataacgtatgactgctaagactgacaaaccattgac 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 729 agctggagcatatgggataaacacataacgtatgactgctaagactgacaaaccattgat 788

                           
Query: 589 gggcattctgtgtgac 604
           ||||||||||||||||
Sbjct: 789 gggcattctgtgtgac 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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