BAC Information

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BAC

Clone NameMSMg01-507P17
Chromosome7 (Build37)
Map Location 62,415,475 - 62,416,100
singlet/doubletsinglet
Overlap geneLuzp2
Upstream geneMrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507P17.T7 (MSMg01no507_p17.b1)MSMg01-507P17.TJ (MSMg01no507_p17.g1)
ACCAG582001AG582002
length1,233760
length of high quality
(start - end)		---625 (78 - 702)
definitionCHROMAT_FILE: MSMg01no507_p17.b1 PHD_FILE: MSMg01no507_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:43 2005CHROMAT_FILE: MSMg01no507_p17.g1 PHD_FILE: MSMg01no507_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGGTTACTAGATAACCGTTGGAACTATAGTGTGACATACTTGATATCA
CATCCTAAAAAATCTCTCCCGTTCTCGTCCTCCCCGCTCCCCTCCCACCC
CATATCTCCGACGTACAAGCAAATCACAGACACGTTCGTGTACAACATAA
ACACAAGAAGTATACTACACACATGCAGAGGCCGATGCCTAGCTCGCGGA
GCCTCGTCCCAGATCTATACAACGTGAAGTATATATATCATACATATATA
TTACTCGTACATCCTCTTGTAGTTGACGATCCTCATAGCCACAAAGAAAT
AACACCGATATATTCGTGACGACCATGAACCTGCTGAATCAACCAGTACA
GGAGAATGATTCCTCTATATTACCCGCGTCTACCTCGACTCAGCAGCCTT
AACTGATATTAACACACTTCTGCACACCTATATATCAAAGATGACGCCAT
TCGCGCGATTCTATCGCACGCAGCGTTTGACGCACGCCGCTGGTTCCAGC
CTCGAATGTCGTGAGCGGCTGGTGTCGCGCAGGAGGGGGCGCGAGCCGTG
ACCCGACTAATCTGGCGCGCTAGTGTGTTCTGTATGGCGGCGACACTAGG
ATAGAGTCCCAAGTGAGATTCACATTATGGCGACGCCGATGGACGCGGTG
GTACTAAAATTCCCTGCACGAAGAGTACTATAGCTCAACTCGAAGATCGT
ACACCAATATGAGATATAAGATGCGCCATGCTAACAACGCGCCATGTCGC
TAAATCACCGGTACCTGCGAACTAATACGACGTAGCGCTCCAATGACGCA
GATATTGATTCTAACGCGTGATGCTATAACGCGCGCACGCACATCCGCCC
GCCGTTATGATTGATCGACGAGTGAGCCTACGGAGTACCAGTGAAATACA
CCGCAGGTGATGTCGAGCGAGAGCACCACAGCATAGGAGACTTATGACTG
AGCTCGGTCACGAACGTCGATGGCCACCTACCTGAACACGGCTACAACGA
CGATACCAGCAGTAAATGAGAGGTCCGAGCGTAGAACGCCATTGCTACAC
CAGTATTAACACCAGCAGCAGATGATAGATAGACACAATGAACCTAGGGA
TGCCAATGGAGCGAGCACGATGCCGTGTTGCGAAAATCTGAGCGCCTATA
CGCATCTATCAAGCGCCGTAGAGACGCGCGCACAGAGTACAGATATACAT
ACGCTGCTATCGCTGAGATCACGATCGTCATAN

NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTTGGTGAGGTCCCTGCACTG
CTCTGGTGATGATATAGCCAAATGGTGATAGCCTTAATTATATATTATTG
AATGAAATTGTTTTCAGATTTACTTAATTATAAATCAGTCTGCAAAATTA
TAACTTTAAAATAGCAATTAGTGTATACAAAGATAAAACCACACCATTAT
ATTTAAACAGGAGAATTTGAAATAATTCATGCAATTTTAATTGTTACAGT
TATGTTTAAGTATCTTTCTTGCTACAAATTACATTTTCTTTGAAAAAGAA
ATTTTTTTATTCTGTTCTAACCAACACATTTTAAGTGTGTAGAGTTCTGG
CTTTATATTTTGTATCCCAGGTAGCTTAATTTGTGTGTTATTTTTCTTCA
TTGTTAACTTGGAATGATTCTACAATTCCCTGAAGTCATCTATTCCTTCT
CATGAGCTAGAAATAATTTTTTAAAAAATATCCTGCATATTATTTCCCAT
GGCTTACATGCAACTAAGATCTTCTAGATGTGAGTCAATTTACTCCAATT
TATTTACCCATTTCCTTTAAATTCAAAGAAACTTTACAGTAGTTCTTTTA
ATAAAAAGTGGGCCAATTGTTTTTCTTTTGTCCTTACTTTGCAACTTTCT
TGTGAGCAGGATGCCAGAGATTAAAAAGTAATAATGTAAAAGACATCCAG
ATGACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_p17.g1 MSMg01no507_p17.g1 CHROMAT_FILE:
MSMg01no507_p17.g1 PHD_FILE: MSMg01no507_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:43 2005
         (625 letters)



>mm_chr7_62415276_62416300
          Length = 1025

 Score = 1187 bits (614), Expect = 0.0
 Identities = 623/626 (99%), Gaps = 1/626 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagttggtgaggtccctgcactgctctggtgatgatatagccaaatggtgatagccttaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 200 aagttggtgaggtccctgcactgctctggcgatgatatagccaaatggtgatagccttaa 259

                                                                       
Query: 61  ttatatattattgaatgaaattgttttcagatttacttaattataaatcagtctgcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttatatattattgaatgaaattgttttcagatttacttaattataaatcagtctgcaaaa 319

                                                                       
Query: 121 ttataactttaaaatagcaattagtgtatacaaagataaaaccacaccattatatttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttataactttaaaatagcaattagtgtatacaaagataaaaccacaccattatatttaaa 379

                                                                       
Query: 181 caggagaatttgaaataattcatgcaattttaattgttacagttatgtttaagtatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caggagaatttgaaataattcatgcaattttaattgttacagttatgtttaagtatcttt 439

                                                                       
Query: 241 cttgctacaaattacattttctttgaaaaagaaatttttttattctgttctaaccaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttgctacaaattacattttctttgaaaaagaaatttttttattctgttctaaccaacac 499

                                                                       
Query: 301 attttaagtgtgtagagttctggctttatattttgtatcccaggtagcttaatttgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 attttaagtgtgtagagttctggctttatattttgtatcccaggtagattaatttgtgtg 559

                                                                       
Query: 361 ttatttttcttcattgttaacttggaatgattctacaattccctgaagtcatctattcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttatttttcttcattgttaacttggaatgattctacaattccctgaagtcatctattcct 619

                                                                       
Query: 421 tctcatgagctagaaataatttttt-aaaaaatatcctgcatattatttcccatggctta 479
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 tctcatgagctagaaataatttttttaaaaaatatcctgcatattatttcccatggctta 679

                                                                       
Query: 480 catgcaactaagatcttctagatgtgagtcaatttactccaatttatttacccatttcct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catgcaactaagatcttctagatgtgagtcaatttactccaatttatttacccatttcct 739

                                                                       
Query: 540 ttaaattcaaagaaactttacagtagttcttttaataaaaagtgggccaattgtttttct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttaaattcaaagaaactttacagtagttcttttaataaaaagtgggccaattgtttttct 799

                                     
Query: 600 tttgtccttactttgcaactttcttg 625
           ||||||||||||||||||||||||||
Sbjct: 800 tttgtccttactttgcaactttcttg 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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