Query= MSMg01no507_p23.b1 MSMg01no507_p23.b1 CHROMAT_FILE:
MSMg01no507_p23.b1 PHD_FILE: MSMg01no507_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:44 2005
(673 letters)
>mm_chr7_136137364_136138436
Length = 1073
Score = 1201 bits (621), Expect = 0.0
Identities = 660/675 (97%), Gaps = 6/675 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattagggaatacggcagatgtgtcgctagagatgtgttattagggaataaggc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattcattagggaataaggcagatgtgtcgctagagatgtgttattagggaataaggc 259
Query: 64 agatgttgcttaataaagaaaccaggcagaaagcaaacatggaaggccatcctgactatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agatgttgcttaataaagaaaccaggcagaaagcaaacatggaaggccatcctgactatg 319
Query: 124 atagagacatggagatgagagaggaagacaagaatgtcagaacaaactctgacaggagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atagagacatggagatgagagaggaagacaagaatgtcagaacaaactctgacaggagat 379
Query: 184 ggcatttaggtagaggaagcagggagaagctggcaaagaatagaagggaaacgtgaagtg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 ggcatttaggtagaggaagcagggagaagctggcaaagaataggagggaaacgtgaagtg 439
Query: 244 ccaggttgtgtgtgtgtgtgtgtgtgtgtgt----agatttgtgtagaggtcagagggta 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 440 ccaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtagatttgtgtagaggtcagagggca 499
Query: 300 gtcttgggtgtcattcctcagaagccatccttgagacaggatctttcagcagcctagagc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atcttgggtgtcattcctcagaagccatccttgagacaggatctttcagcagcctagagc 559
Query: 360 ttgccgagtaaactaggccagctgatgagtaagccccaggggtctgcccgtctctgcctc 419
||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtcaagtaaactaggccggctgacgagtaagccccaggggtctgcccgtctctgcctc 619
Query: 420 ccaagcactgggattacaagggtgccatcccttttcttttgacatgggctctggggtttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccaagcactgggattacaagggtgccatcccttttcttttgacatgggctctggggtttg 679
Query: 480 aagtgcttgatgtgatttctcaattgtccaacagtgtggcatgtttgctaaatataaagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagtgcttgatgtgatttctcaattgtccaacagtgtggcatgtttgctaaatataaagt 739
Query: 540 cagagctgcaggttggtccgtgtggagcatcatgttggct-agggctctgaaaatgcagc 598
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 740 cagagctgcaggttggtccgtgtggagcatcatgttgg-tcagggctctgaaaatgcagc 798
Query: 599 catgtttttttactaactgcatccctttacccttcagaaagaatctaagcttcatgtagg 658
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 799 catgtttttttactaactgcatccctttacccttcagaaagaatctaggcttcatgtagg 858
Query: 659 aaacaaaatctttaa 673
|||||||||||||||
Sbjct: 859 aaacaaaatctttaa 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_p23.g1 MSMg01no507_p23.g1 CHROMAT_FILE:
MSMg01no507_p23.g1 PHD_FILE: MSMg01no507_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:45 2005
(622 letters)
>mm_chr7_136263224_136264245
Length = 1022
Score = 1164 bits (602), Expect = 0.0
Identities = 617/622 (99%)
Strand = Plus / Minus
Query: 1 aaagatgctttctctgtctccagcaaccactgccttctttattgaattattcattattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaagatgctttctctgtctccagcaaccactgccttctttattgaattattcattattga 616
Query: 61 agtcatgccatcagcagaactaaaccatctctgttaaggacaatttgcctacaaaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agtcatgccatcagcagaactaaaccatctctgttaaggacaatttgcctacaaaatatt 556
Query: 121 tagcaagtgggagactcatcaagaccaatgtgtctgctttcaccataattgtgctttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tagcaagtgggagactcatcaagaccaatgtgtctgctttcaccataattgtgctttctc 496
Query: 181 aaagtccaaacatcatcacagctaacactacagaaaagcacaatcaggttgaatatacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaagtccaaacatcatcacagctaacactacagaaaagcacaatcaggttgaatatacag 436
Query: 241 acgtcaatcactcctttaaatctcaagggtcagaaactgttcttgaatgttaaatacttg 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgtcaatcactcctttaaatctcaagggtcagaaactgttcttgaatgttaaatacttg 376
Query: 301 ctctcagccaagagtcatatttttaaccttcttcaggggactgccatcaccccccatgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctctcagccaagagtcatatttttaaccttcttcaggggactgccatcaccccccatgaa 316
Query: 361 cagaattttttaaatgtcaggagagttttattcttgtgtttcctgtaagagtcactgagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagaattttttaaatgtcaggagagttttattcttgtgtttcctgtaagagtcactgagt 256
Query: 421 attctcagtagcatcctgagattgctctaagggtactctcttccttgagcccatataggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 255 attctcagtagcatcctgagattgctctaagggtactctcttccttgagcccatacaggc 196
Query: 481 acacaggcacacacatgcacatgcacacgtgcacacacacacatatttcagtttccttgg 540
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 195 acacaggcacacacatgcacatgcacgcgtgcacacacacacacatttcagtttccttgg 136
Query: 541 accatcatcttttctgtctttggcttacattagacttgtgatgttagttggggatatgtg 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 135 accatcatcttttctgtctttggcttacattagacttgtgatgttagttggggagatgtg 76
Query: 601 taaaatagaaactctaacctgt 622
||||||||||||||||||||||
Sbjct: 75 taaaatagaaactctaacctgt 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
