BAC Information

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BAC

Clone NameMSMg01-508K23
Chromosome7 (Build37)
Map Location 73,103,927 - 73,104,464
singlet/doubletsinglet
Overlap genePcsk6
Upstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241
Downstream geneSnrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508K23.T7 (MSMg01no508_k23.b1)MSMg01-508K23.TJ (MSMg01no508_k23.g1)
ACCAG582540AG582541
length757773
length of high quality
(start - end)
608 (51 - 658)538 (82 - 619)
definitionCHROMAT_FILE: MSMg01no508_k23.b1 PHD_FILE: MSMg01no508_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:40 2005CHROMAT_FILE: MSMg01no508_k23.g1 PHD_FILE: MSMg01no508_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCTGCTTACAAATTGGTCCATTTCTTTTTTTTTTTTTT
TAATGTTAAAAAAAACTTAGTCTCAGGCAAGTTCTTAGGACATGGGCAGA
AAGCAGCCTGATTCTTTGCCATCATAGCAATGGACTCTAGCCCAGTTCCT
GGTATTGTTTCCCCATCATGAAACATCATCATAGTCCTCATTGCTCTCGG
CCTTACTGCCTTTCAGGCTCCCAGTGGAATGGCCATTAAGTTCTGCTTAC
AGCATTTAACCACTTTTCTACCCCTTCCCCTCCCCCCAAAATCCCAAAGT
CTTCGATGTTCCTTCAAAATGACAATAGCATAATCAGGTTCCTTAAAGCA
ACAGTCTGGTACCCATGTCTCTATTAGTTACCTTTCTGTTGCTGAGATAA
AATACCACAGCTAACACAGCTTATAGAAGAAAGGCTTTTTGGGGCTTTAC
TGTTTGAGAGTCCTAAATGGGGCAGGCATGGCAGCAAGAAACAGGCATGA
GGCCTGGAATAGGAAACTACAAGTAGGAAGCAAAGAGAGCTAACTGGAAG
TGGTAGAGCCCACTCTCCTCAAAACAAACAAACAAACAAACCAACGAACA
AACAAACATATAAACCCACGGGGACATTTACATTCAAACCACAAGGGACC
ATAGGTAGTCCTACAGAGATTCTCATGCTGCTTTTTTAATACAGAAATTG
CATATCC
NTTTTNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGCTAAAAGGAGAT
ATGATGAAGATGAACCCCATTCTTAAATGACATTTTTAGGCCTCTAAAGT
CAGAGAGGGTTTAATTGGCATTTCTGGGCACAGATGAGTCAAACATCTTA
TAAAATAGTAAAGTCTGAGGCAGGCTGCCAAGGCCCTGGGGTTGACCTCC
TACATAGAGGGACAGGCTGGGACCTGAGATCCAACAAAGTCTGGTCTTGG
CCAAACTGGCTTTGGGGAAAGGAAGTCTTAGCCCTTATGAGAGAACTTAC
GATCTTCCGTTCATAGAAGGCCCCGCTGCTGTAGGTGGTAGCCAACGTGG
AAGCGCATTCTTCCAGGTACCAGGGTTTGTGGCCGTTCTCAGTGGTGCTG
CTTACGGAGATGGTGTAGATGCTGTTGGTGTAGCCATCACAGGAGCAGTG
GTCCCCTTCTCTCCCACCATTCCCAGAGGCCCAAACAAAAATGGAGCCCA
GACCTTGGCGACCCTACATGGAAGCAAGAACAGATGTTAGCGACTGAAGT
GGGGCACCATGGAAGCATCTCACACCAGTGTGCAACCCCACCTTCAGCCT
GTTCCCTCACAGGGCTGTTGAAGTTGCCCTGAGAACACGTGGGTCCTGCC
CAAGGGTTCTGTCGGGTTTCAGTGGAGCTGTTTTGCTTGTGGGACAGCAT
AAAGACACGGATGCTCATGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_k23.g1 MSMg01no508_k23.g1 CHROMAT_FILE:
MSMg01no508_k23.g1 PHD_FILE: MSMg01no508_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:40 2005
         (538 letters)



>mm_chr7_73103727_73104664
          Length = 938

 Score = 1017 bits (526), Expect = 0.0
 Identities = 535/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagagctaaaaggagatatgatgaagatgaaccccattcttaaatgacatttttaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagagagctaaaaggagatatgatgaagatgaaccccattcttaaatgacatttttaggc 679

                                                                       
Query: 61  ctctaaagtcagagagggtttaattggcatttctgggcacagatgagtcaaacatcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctctaaagtcagagagggtttaattggcatttctgggcacagatgagtcaaacatcttat 619

                                                                       
Query: 121 aaaatagtaaagtctgaggcaggctgccaaggccctggggttgacctcctacatagaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaaatagtaaagtctgaggcaggctgccaaggccctggggttgacctcctacatagaggg 559

                                                                       
Query: 181 acaggctgggacctgagatccaacaaagtctggtcttggccaaactggctttggggaaag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 558 acaggctgggacctgagatccaacaaaatctggtcttggccaaactggctttggggaaag 499

                                                                       
Query: 241 gaagtcttagcccttatgagagaacttacgatcttccgttcatagaaggccccgctgctg 300
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaagtcttagaccttacgagagaacttacgatcttccgttcatagaaggccccgctgctg 439

                                                                       
Query: 301 taggtggtagccaacgtggaagcgcattcttccaggtaccagggtttgtggccgttctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 taggtggtagccaacgtggaagcgcattcttccaggtaccagggtttgtggccgttctca 379

                                                                       
Query: 361 gtggtgctgcttacggagatggtgtagatgctgttggtgtagccatcacaggagcagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtggtgctgcttacggagatggtgtagatgctgttggtgtagccatcacaggagcagtgg 319

                                                                       
Query: 421 tccccttctctcccaccattcccagaggcccaaacaaaaatggagcccagaccttggcga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccccttctctcccaccattcccagaggcccaaacaaaaatggagcccagaccttggcga 259

                                                                     
Query: 481 ccctacatggaagcaagaacagatgttagcgactgaagtggggcaccatggaagcatc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccctacatggaagcaagaacagatgttagcgactgaagtggggcaccatggaagcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)