BAC Information

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BAC

Clone NameMSMg01-508P23
Chromosome7 (Build37)
Map Location 112,147,278 - 112,147,875
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672
Downstream geneGA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508P23.T7 (MSMg01no508_p23.b1)MSMg01-508P23.TJ (MSMg01no508_p23.g1)
ACCAG582778AG582779
length755767
length of high quality
(start - end)		581 (80 - 660)598 (82 - 679)
definitionCHROMAT_FILE: MSMg01no508_p23.b1 PHD_FILE: MSMg01no508_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:06 2005CHROMAT_FILE: MSMg01no508_p23.g1 PHD_FILE: MSMg01no508_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGATGATTCACAGTCAGCAGCCCAACTCCCAACAATG
GTCAGTAGCAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTGCTTAGTC
CCACATGACAAGCAGGCAAAGGACAGACAGAGACAGCCCTCCTTCTTCTA
ATGTCCTGATAAGGTCTCCAGCAGAAGGTTTATCCCAGATTAAATGTTTG
TGCCACTATACCTTTTATCCCAGCTGACCTTGATCTTGGAGATATCCCTG
TTAATCTTCTGGAGTCCATAGCCACTATGCCTCAAGATCTCCATACCAAG
ATCCCGGTCAGAAACTTCTATCTCCCAGCCTCCAGATTAGGGTCACTGGT
GAGCCTTCCAATTCTGGATTGTAGTCCACCCCAGATATATTCAAGTTGGC
AACCAGGAATATCCAGTACAGCCATCATACCAGGATCTAAATATAACTGG
GTAGGATCTTGTGCCCAAATACCTTAATCTGTTATCTCCTAGAAGATAGG
ATTCAGTTCCGTTTCACTTCCTAGTGCCCCTGTATTAATTCAACCATATA
TTTTATATTTCTTCTTTCTAATATTTTTATTCTTTTCCAAAGATCTCTTT
CTTATGGTCCAGTCAAGGCTTTTTGGTGGAAGTATCATCTGATCTACTGA
GTAGACTGCAGNTGACATTAGGATAAACAATGACCTTCAACCTACAGTCT
GTTTC

TTTNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCAAGCATTAAATAC
AAATGCTCTGAGATCAGAAAACGGCTTTTGAGAATGAATTGCACAGGACA
GGTAAAGGACAGAGAGGAGGCTCATACTGGTTCCTCCTTCTGTTCCTCAT
ACAGATCCTTCTAACAGTGAAATTTCTCTATTTAGAGATTTTAATTTTCT
GTTTCCTCTCACCAATCATGCTTCTTGTTCTTCTGAATTTTCATTTTGAT
TTCCTGTGATCTTAAGTTTCTACATGTTGTACAGTATCCTGTTTTCCTTG
GCTCATAGAAATGTGTTCTGTTTTTTTATTATTAATACTATTTTAGCTAA
TTCAAGGGTCGACTGTTCGTAGATTATTTTCAGCAAGCCTCTCACCTTTG
GTCCTTATTTTAAAATGTGACATCGTTATTAAGTCCTGGAGAATAGGATT
GGAGGGAATATACCTCAGGTGAATTTAAACTGACTACAATTGTAAGAGAC
ATCAGAAGTAATACAAACCATTTCAGGAATAAATTGGGAGAAATCAAGCA
GTGCTTATTATAATGAGAGATGCAGCCCAAGAAACAAATGAAGAATAAAG
CACTTGAACTGTAATATAGCATAATCCATGGTGCTTGGTGAGGAGGGGTT
GGGAGAACTTTGAGAAGGAGCCAGAAACTATCAAGATGTCATAAAACAGC
TTCATGTTGATGGTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_p23.g1 MSMg01no508_p23.g1 CHROMAT_FILE:
MSMg01no508_p23.g1 PHD_FILE: MSMg01no508_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:06 2005
         (598 letters)



>mm_chr7_112147078_112148075
          Length = 998

 Score = 1125 bits (582), Expect = 0.0
 Identities = 594/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggcaagcattaaatacaaatgctctgagatcagaaaacggcttttgagaatgaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgtggcaagcattaaatacaaatgctctgagatcagaaaacggcttttgagaatgaattg 739

                                                                       
Query: 61  cacaggacaggtaaaggacagagaggaggctcatactggttcctccttctgttcctcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cacaggacaggtaaaggacagagaggaggctcatactggttcctccttctgttcctcata 679

                                                                       
Query: 121 cagatccttctaacagtgaaatttctctatttagagattttaattttctgtttcctctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cagatccttctaacagtgaaatttctctatttagagattttaattttctgtttcctctca 619

                                                                       
Query: 181 ccaatcatgcttcttgttcttctgaattttcattttgatttcctgtgatcttaagtttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccaatcatgcttcttgttcttctgaattttcattttgatttcctgtgatcttaagtttct 559

                                                                       
Query: 241 acatgttgtacagtatcctgttttccttggctcatagaaatgtgttctgtttttttatta 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acatgttgtacagcatcctgttttccttggctcatagaaatgtgttctgtttttttatta 499

                                                                       
Query: 301 ttaatactattttagctaattcaagggtcgactgttcgtagattattttcagcaagcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttaatactattttagctaattcaagggtcgactgttcgtagattattttcagcaagcctc 439

                                                                       
Query: 361 tcacctttggtccttattttaaaatgtgacatcgttattaagtcctggagaataggattg 420
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 438 tcacctttggtccttatttaaaaatgtgacatcgttatcaagtcctggagaataggattg 379

                                                                       
Query: 421 gagggaatatacctcaggtgaatttaaactgactacaattgtaagagacatcagaagtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagggaatatacctcaggtgaatttaaactgactacaattgtaagagacatcagaagtaa 319

                                                                       
Query: 481 tacaaaccatttcaggaataaattgggagaaatcaagcagtgcttattataatgagagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacaaaccatttcaggaataaattgggagaaatcaagcagtgcttattataatgagagat 259

                                                                     
Query: 541 gcagcccaagaaacaaatgaagaataaagcacttgaactgtaatatagcataatccat 598
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 258 gcagcccaagaaacaaatgaagaataaagcacttgaactataatatagcataatccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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