BAC Information

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BAC

Clone NameMSMg01-509D12
Chromosome7 (Build37)
Map Location 34,666,072 - 34,666,436
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803
Downstream geneAbpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509D12.T7 (MSMg01no509_d12.b1)MSMg01-509D12.TJ (MSMg01no509_d12.g1)
ACCAG582948AG582949
length741769
length of high quality
(start - end)
319 (324 - 642)519 (81 - 599)
definitionCHROMAT_FILE: MSMg01no509_d12.b1 PHD_FILE: MSMg01no509_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:23 2005CHROMAT_FILE: MSMg01no509_d12.g1 PHD_FILE: MSMg01no509_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCTATAATTTGCGGCCGCAAAACGAACCACTTTCATACTCGGGNTNGN
GGAANCCANGTTACAAAAAATGCGCACAANANCNNNCCATAAATCCAGNC
CTTTACAGGATAATAACAGACAAAAAATACAAGGATGGAAACTATGCCCT
AGTAAAAGCAAGAAAGTAATTCTTCAACAAACCTAAAAGAAGACAGCCAC
AATATCAGAATGCCAACTCTAACATCAAAAGTAATAGGAAACAACAATTG
CTTTCCTTAATGTCTCCTAATATCAATGGAGTCAATTCCCCAATGAAAAG
ACATAGACTAACATACTTGCATACAAACAGGACCCAACATTTTGCTGCTT
ATAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCGGAGTGAAAG
GCTGGAAAACGATTTACCAAGCAAACATTCTGAAGAAACAAGCTGGAGTG
GCCATTTTAATATCTAATAAAATCGACTTCCAACCCAAAGTTATCAAAAA
AGACAAGGAGGGGCACTCCATATTCATCAAAGCTAAAATCTTCCAAGAGG
AACTCTCATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCA
TTAAAGAAACTTTATTAAAGCTCAAAGCACACATCGCACCTCATACTATA
ATAGTGGGAGACTTCAACACTCCACTTTCATTAACGGACAGATTGTGGAA
ACAGAAATTAAACAGGGACACAGTGAAACTAACAGAAGTTT
NTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATTCAAAAGGGGAATAC
TACAAATTTACCAACAGAGATATTAATCTCCTCAATAATGAGGATTTATG
TATACACATATGCATAAAATATCGTGGCTTTTGTTCATAAATTACAAGTC
TAAAATCAGGAGGTAATGAAGAAGCACTGTCTCAATGGTTAATATTTGTT
TAGAATGCTTTACTTGCTTTGCATCTTTTTATTATTCAAAATGATTGTGG
TTATGATTTTGGTGGTTATATTAAACTTCTTCTGGAATGGAGGCCAAGCT
CTTCCCTTAATGATTTCTGGTTACTGGACCAAGGTCATGCTATTTTGGGC
CAGAGGCTCTGCATTTGTGTTGACAGGAAAGGAGAAAAGGCTCTGGACCC
TTTCCAGATTGATGTGGATTAGATATAACAGGGAATCACCACCAGAAGAT
CTCCAAAAATGTGAGAACACCAAATAAGTCAGGTAAACTTATCTGCTGTT
TTCTCACCATGGGAACAGCCTAGTAACTGGCTTAGACATAAAAACCTCTC
TAGCCAAAACTTCTGCTAAATTGAGACAATAAATCTTATTGGGTATGGGG
TCCTTAAGATTCTTCATGCCGTCCTTCATATGGCATGTGTGAAGATTTAT
TACAATTGGTTATTTATAAAAATCATCTCATAATAAGACAGTTGTCTTTT
ATCTGCTCAACATGAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_d12.g1 MSMg01no509_d12.g1 CHROMAT_FILE:
MSMg01no509_d12.g1 PHD_FILE: MSMg01no509_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:24 2005
         (519 letters)



>mm_chr7_34666072_34666990
          Length = 919

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catattcaaaaggggaatactacaaatttaccaacagagatattaatctcctcaataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catattcaaaaggggaatactacaaatttaccaacagagatattaatctcctcaataatg 306

                                                                       
Query: 61  aggatttatgtatacacatatgcataaaatatcgtggcttttgttcataaattacaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aggatttatgtatacacatatgcataaaatatcgtggcttttgttcataaattacaagtc 246

                                                                       
Query: 121 taaaatcaggaggtaatgaagaagcactgtctcaatggttaatatttgtttagaatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taaaatcaggaggtaatgaagaagcactgtctcaatggttaatatttgtttagaatgctt 186

                                                                       
Query: 181 tacttgctttgcatctttttattattcaaaatgattgtggttatgattttggtggttata 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 185 tacttgctttgcatctttttattatttaaaatgattgtggttatgattttggtggttata 126

                                                                       
Query: 241 ttaaacttcttctggaatggaggccaagctcttcccttaatgatttctggttactggacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ttaaacttcttctggaatggaggccaagctcttcccttaatgatttctggttactggacc 66

                                                                       
Query: 301 aaggtcatgctattttgggccagaggctctgcatttgtgttgacaggaaaggagaaaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  aaggtcatgctattttgggccagaggctctgcatttgtgttgacaggaaaggagaaaagg 6

                
Query: 361 ctctg 365
           |||||
Sbjct: 5   ctctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)