Query= MSMg01no509_e08.b1 MSMg01no509_e08.b1 CHROMAT_FILE:
MSMg01no509_e08.b1 PHD_FILE: MSMg01no509_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:27 2005
(645 letters)
>mm_chr7_139448640_139449686
Length = 1047
Score = 1048 bits (542), Expect = 0.0
Identities = 610/646 (94%), Gaps = 25/646 (3%)
Strand = Plus / Plus
Query: 5 gaattcacattttacggctaatggatgagaacttccccaaccagaaacaatgatgaagga 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattcaatggctaatggatgagaacttccccaaccagaaacaatgatgaagga 264
Query: 65 tgatcatagcc----ctcccccaaaaaaaaaaaccatggagtcatctgatgcctctgtgg 120
||||||||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 tgatcatagccgccccccccccaaaaaaaaa--ccatggagtcatctgatgcctctgtgg 322
Query: 121 gatacatcagggacccacccttgctccccctgtcctgtcttcacgctcctcacagagtgg 180
||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 gatgcatcagggacccacccttgctccccctgtcctgtcttcac---------agagtgg 373
Query: 181 tttgctgaatccagtttcatacaatagcagtcttcagtgctcatgctaggatggagccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttgctgaatccagtttcatacaatagcagtcttcagtgctcatgctaggatggagccac 433
Query: 241 cacaggggacaaatccttggctctgtgagactcatgtgtgatagctacttactcatcacg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 434 cacaggggacaaatccttggctctgtgagactcaggtgtgatagctacttactcatcacg 493
Query: 301 aagaggtaaggaacataaggtgggagaaccttccacctcatgtgtgcgtgtgtcagactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagaggtaaggaacataaggtgggagaaccttccacctcatgtgtgcgtgtgtcagactc 553
Query: 361 cccctctcacccactgacaaaactccagtgaggcaagatctgagcagggcacggcacagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 554 cccctctcacccactgacaaaactccagtgaggcaagatctgagcagggcatggcacagc 613
Query: 421 actcaggtgagtgagcaggggccccaaccttgttgaagcctgtgttagccatgct-acac 479
|||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 614 actcaggtgagtgagcaggggccccaaccttgctgaagcctgtg---------ctcacac 664
Query: 480 ctccactagccatggactcaacaaagcagatcatagctcaacatagcttagcatcaaatg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctccactagccatggactcaacaaagcagatcatagctcaacatagcttagcatcaaatg 724
Query: 540 ctcagtcacatttggtgagtgaatgttatgcatacacatttaattaaataacagcccatt 599
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 725 ctcaatcacatttggtgagtgaatgttatgcatacacatttaattaaataacagcccact 784
Query: 600 cccccatttcactgatgaggaaataagacacagatagcttaagttt 645
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 785 cccccagttcactgatgaggaaataagacacagatagcttaagttt 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1047
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1037
Effective search space: 658495
Effective search space used: 658495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_e08.g1 MSMg01no509_e08.g1 CHROMAT_FILE:
MSMg01no509_e08.g1 PHD_FILE: MSMg01no509_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:27 2005
(565 letters)
>mm_chr7_139604591_139605555
Length = 965
Score = 1062 bits (549), Expect = 0.0
Identities = 561/565 (99%)
Strand = Plus / Minus
Query: 1 tgcaggaagatgccttaggacggacagtagacaaaacagtgcgtgagagaggcaagcaag 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 765 tgcaggaagatgccttaggacggacggtagacaaaacagtgcgtgagagaggcaagcaag 706
Query: 61 tagaagccaaacttacacacatggcaacccagtcaccaaaaatcccaagttagaaattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tagaagccaaacttacacacatggcaacccagtcaccaaaaatcccaagttagaaattca 646
Query: 121 tccacagagtgtctgcttctccatgttcagtggatgctccagataaaatgatgtttatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tccacagagtgtctgcttctccatgttcagtggatgctccagataaaatgatgtttatgt 586
Query: 181 caaggagcctggaatagagaggcctctgttcaaagggaggcagcccaggtccatcagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 585 caaggagcctggaatagagaggcctctgttcaaagggaggcagcccagggccatcagtca 526
Query: 241 ggactgggtacaatgtggataattgctatgctagcatcaaagtccaatgagcatgggatg 300
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 525 ggactgggtacaatgtggataattgctatgcgagcatcaaagtccattgagcatgggatg 466
Query: 301 cttagggaagatggggctttttgcattgagtctcagtcattagcaaaataccacatttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cttagggaagatggggctttttgcattgagtctcagtcattagcaaaataccacatttaa 406
Query: 361 aattagttagaaaaggtaattagtgtcaaagagcaattgcagtatcgttaaggtgacgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aattagttagaaaaggtaattagtgtcaaagagcaattgcagtatcgttaaggtgacgga 346
Query: 421 tgttggtgtggggtgtgcactaatgacttatggaattttctttcaggagacaattggagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgttggtgtggggtgtgcactaatgacttatggaattttctttcaggagacaattggagc 286
Query: 481 aatttggtggtcagcagacagtctgcaaatcaatcaccacatgagagtcaataatttatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aatttggtggtcagcagacagtctgcaaatcaatcaccacatgagagtcaataatttatc 226
Query: 541 attgctatttaaagtatggagtctg 565
|||||||||||||||||||||||||
Sbjct: 225 attgctatttaaagtatggagtctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
