BAC Information

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BAC

Clone NameMSMg01-509H22
Chromosome7 (Build37)
Map Location 52,996,901 - 52,997,479
singlet/doubletsinglet
Overlap geneSult2b1
Upstream geneZfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4
Downstream geneEG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509H22.T7 (MSMg01no509_h22.b1)MSMg01-509H22.TJ (MSMg01no509_h22.g1)
ACCAG583157AG583158
length800809
length of high quality
(start - end)		583 (44 - 626)525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no509_h22.b1 PHD_FILE: MSMg01no509_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:44 2005CHROMAT_FILE: MSMg01no509_h22.g1 PHD_FILE: MSMg01no509_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACACGAAATTTCGAACCTCCTCCACAGACGCGCGAGGTTCCGAGAAC
AAGCAACAGCCAGGGCAGACAGAGCGCTCAGAGAGAGCCAGATTAACCTT
CCAGTGGATAAGCAGAGGTTTACCCAGTGACACTGTGCCCAGCAGCACAC
ACCTGCCATTCCAGAACCCGAGACACTGAGGCAGCAGGACCAGCTGAGGT
TCAAGGCCAGCCTGGGCTACATGAAAACCTTTCTCAACAAAAATGAACAA
ATTACCCAGCAAACCATGTGCGGCTGGTGGCACTCAGTGCTGTGAAGGCT
TGGGAGACAGGGAAGGATTGGGGACACTGTGGCAGCCCTAGAGGGGAGGG
GACATTAGCTAGGCCTTCAGAGTCTCCCTGGAGCGGGGACTTAGTGCGCA
GTGCAAAGGAAGGTACTGTCAGCAGAGGACAAGCTGCTGGGTTCTGCAAA
GCAGGCTCCTCCCCTCCCTCCTCCCTTCTCTCCTCCCTTCCTCCCCAGCC
CAGACTAGCACTACCGGTACCTGATTTGGGGTAGGTGACAATGAAGATGT
CGTCGTCCCGCACGTTGCTAGTGTTCTCGGCCAGACTGAGGCTCTCCGGT
GAGTACATGCCGACAGGAAAAGGGATACCTTTGTATCTGAAGTATTCACC
TCCAAAATTCCAGCTGAAAGAAGGGAAGGGCACGTGTTAAGAAGACAAAG
AGGTGGGCAGGAGTCGCAAGGCCCTTCTTCACACGCCAGTGAGAGGGTCN


CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGGACAGTCAGGGCTATACAGAGA
AACCCTGTCTCGACCCCCACCACACCCCCCCAAAAAAGAAATTAATGGTG
ATTAAGAAGAGACCAGCATCACTGAGGTGAAATCTTCTGGGAAGTATTTT
CTGAGAGCACAAAGAAGCTGTGTTCCAGAGATAGCTGAGGTTGAACCTTG
TGCTGGTAGCTAGACTTGGTAATGTACAAAAATCACCCAGGTGGTACTGG
TTTTGAAGGCATGAAGGGGTAATGAAGAATAGCTGAGGCTTGGCACTGTC
AGAGGCCATGGAAGGCCATTGGTGAAGGTGCAGCCTCAGTTTCAGTTGAC
GGCCCAGGACTGAAGAGGTCACGCAAAGGATCTGAGGCTTAGCAACATGA
AGAGAGCCTATGAGAGGCTAGTGGTGAAGCCTAGTTGCAGCAGAAGATCC
CAGATCACCAAGAACAGCAGAGCAGTGGAGTGGATCAGCCTGAGCTTAGA
GTGCTACCGAGGGCAAAGCTGGAGAAGTGATGCCAGCCCTTGGGAGGAGC
CCAGAAGATCTTGTCTGGATCCCAGACACTGAAACAAGAAGTTGCCCTGG
AGACCCCAAGATGCCAGAGCCATAGTCTACCTCCTGAAGGATGTTGCTAA
CAGGGAGTGGAANGAGTCCAGCAAAATAAGTTGTTGCAGCCACAAAGATG
AAAAAGGATTTGAGCCCGGCAGCCATGGCGCACCCCTTAATTCCCACACT
TTGGGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_h22.b1 MSMg01no509_h22.b1 CHROMAT_FILE:
MSMg01no509_h22.b1 PHD_FILE: MSMg01no509_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:44 2005
         (583 letters)



>mm_chr7_52996697_52997679
          Length = 983

 Score = 1035 bits (535), Expect = 0.0
 Identities = 568/579 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacacgaaatttcgaacctcctccacagacgcgcgaggttccgagaacaagcaac 64
           |||||||||||||||   ||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 205 gaattcacacgaaatgaggaacctcctccacagacacgcgcggttccgagaacaagcaac 264

                                                                       
Query: 65  agccagggcagacagagcgctcagagagagccagattaaccttccagtggataagcagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agccagggcagacagagcgctcagagagagccagattaaccttccagtggataagcagag 324

                                                                       
Query: 125 gtttacccagtgacactgtgcccagcagcacacacctgccattccagaacccgagacact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttacccagtgacactgtgcccagcagcacacacctgccattccagaacccgagacact 384

                                                                       
Query: 185 gaggcagcaggaccagctgaggttcaaggccagcctgggctacatgaaaacctttctcaa 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagacagcaggaccagctgaggttcaaggccagcctgggctacatgaaaacctttctcaa 444

                                                                       
Query: 245 caaaaatgaacaaattacccagcaaaccatgtgcggctggtggcactcagtgctgtgaag 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 caaaaatgaacaaattacccagcaaaccatgcgcggctggtggcactcagtgctgtgaag 504

                                                                       
Query: 305 gcttgggagacagggaaggattggggacactgtggcagccctagaggggaggggacatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcttgggagacagggaaggattggggacactgtggcagccctagaggggaggggacatta 564

                                                                       
Query: 365 gctaggccttcagagtctccctggagcggggacttagtgcgcagtgcaaaggaaggtact 424
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 gctaggccttcagagtctccctggagcagggacttagtgcgcagtgcaaaggaaggtact 624

                                                                       
Query: 425 gtcagcagaggacaagctgctgggttctgcaaagcaggctcctcccctccctcctccctt 484
           || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 gttagcagaggacaagctgccgggttctgcaaagcaggctcctccccttcctcctccctt 684

                                                                       
Query: 485 ctctcctcccttcctccccagcccagactagcactaccggtacctgatttggggtaggtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctctcctcccttcctccccagcccagactagcactaccggtacctgatttggggtaggtg 744

                                                  
Query: 545 acaatgaagatgtcgtcgtcccgcacgttgctagtgttc 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acaatgaagatgtcgtcgtcccgcacgttgctagtgttc 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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