BAC Information

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BAC

Clone NameMSMg01-509J08
Chromosome7 (Build37)
Map Location 79,390,939 - 79,391,508
singlet/doubletsinglet
Overlap geneMctp2
Upstream geneLOC665535, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509J08.T7 (MSMg01no509_j08.b1)MSMg01-509J08.TJ (MSMg01no509_j08.g1)
ACCAG583225AG583226
length7791,293
length of high quality
(start - end)
574 (69 - 642)---
definitionCHROMAT_FILE: MSMg01no509_j08.b1 PHD_FILE: MSMg01no509_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:51 2005CHROMAT_FILE: MSMg01no509_j08.g1 PHD_FILE: MSMg01no509_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNACC
GCGGAANTCCAGTTTACCAGAAAACATGTGCGTCTGGGTGCAGGGATAGG
TTCTGCCTCAGAAGCCCAAGTGGAACGTGATGGGAAGTGATGTCCCCCTC
CAGCCTCCAGGTGTATAATATACAAGTACACCCCCATGCACAGGTATGCA
TGCATACATACATATATATGTACACACACAATGGGGTGGGGAATAAACTA
ATTAGAAAAATAAGGATGAAGCACTGGAGAAGAAATAGCAAGAAGAGAGG
AGAATGGGGCTGGTTCCCACAAAGGTGTGTCCATATATCTACCTCAGCTG
TTGAATGTCTCCCACGTCTTGTTAATAGTCCCACCAATCACCACCAACTC
TAGTAGACTTCCTCCACACAGGCTACAATGTTAACTCTAGGCTTGAGTCT
AAGTCCCCCAGGCACCAGTCTAAGTCCACCAGGCACCATGGTGACCTCAC
CTGTGTCCCCACGCCCACACTTGACCGGCTCACCTCAGTGGTCTCGGCTC
AGGCACATTTTGCTTTCTCTCTTCAGTCTCTACTCACCCTGTCTCCATTT
CTGCTCTAATGCTCTCCCATCCCCTAAGCTCTGTCATTTCCCTCTCCAGG
AAATCTACTGTCATGGGCTACGGTCACAAGTCCAAATCTATTTTTTTGAT
ACGTATGAATCGTATGAATCCCATGCCATGTTTGACCGTGTTCAAATTCT
GCCTTTCTTCAAAGGGGACAAATGGAAGN
CCCCTTAATTTCTCTTCTCTGTGTTTATTCNTCTNTGGGTGGAGCGCGTC
TATTCTCTCTCTGCAAAGAGTGTTGAGGGAGAGACGGCATAGTATCTTGT
GTTTATGCACTGCCGTAGAGATCTACGCGTAGGTGTTCACGCGTTCTACG
ATGTGTCTATAGTGTTCCTCCTGAAGTAGTGTGTGTGTTGTGGTTTGCAT
GTCNCGCGCAGTAGCGCTGTCGATACGCNTCCTATATGCAGCGCGCTTGT
GTTTTAGTTGATGCTGTTAGATTATTACTTTATAATGCCGCCCGTAATAT
CTCGCATGACCGCTTGTATCAACACCCACACAGCATCACTTATCTATCTC
GCAGATGTCGCTGTCGCGTCGAGTACGAGCGTCTGTGGATGTGTCATATC
GAAATGAGCTCGCACTCCGCTCTGATACTGTAGCCCACCATATACCTATT
TGCGTATATNATTTTACTCTATATTCATCCCGCCTGCTAGACGTCGCGTG
TCTTTACGCCTCCCTCTATTCCGGCGTCTTCCGGCTCGAATTCGACTCGT
ATCACGTCGCTAACTATTCGCACCTTCGTGGAGCGTCACACAGCCGTATT
ATCANATACTGCTCGACGCACGAGGTGTGTGTATCGGATATAATCTTCTA
TATACCACGATGATTAAACCTACTCCTGTGATAGTTCTCTTATGCTCCTC
ATATTAAAGATATACATTATTACAGCTGCAGGAGTTCTTATCACACCTAG
GCAGTTGTGGTATTCCTCTCACCGTAATATTTGTGTATGATCCTTCACCG
CATTGCGCACCCAGCGTATTGTCATGCACCCTCTTATTACTTAATAATGC
AATAACGCTCTCCACCACCCCGCGATGTCTTCATTTTACGACGATATTCT
GCGNCACACGCCCGTCTCGTGCAGCGCGCATATATATTATTTTATATTAT
GNTACCCCCACACCTACCCCACTCGACCCACCCAATATTTCCTGCCCCGC
GCCCTGACTCGTTTTTGTTTTCATTTCCGTATTCACTCGCGTACCCGTAC
CCATATATAATATTCACCACCACGTATGTGTGATCTTTGTCTGTGGAGAG
CTGTTTCGCGACCTTCTCCTCCCCACTATAATCACNATATGGCATGCGCG
ACTTGATTTTCGCGCGCCCTGCCCTCTTATCCCCATTTTATTCCGCATGC
GCAATTATACGCTGCACGGTCTTTACCGCAACACGAGCTTGTGTTAGAGA
TAGTCCCTGGGTCTCTCGCGCAGTAATAGATATTAATATATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_j08.b1 MSMg01no509_j08.b1 CHROMAT_FILE:
MSMg01no509_j08.b1 PHD_FILE: MSMg01no509_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:51 2005
         (574 letters)



>mm_chr7_79390735_79391708
          Length = 974

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/574 (98%), Gaps = 4/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaacatgtgcgtctgggtgcagggataggttctgcctcagaagcccaagtggaacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agaaaacatgtgcgtctgggtgcagggataggttctgcctcagaagcccaagtggaacgt 264

                                                                       
Query: 61  gatgggaagtgatgtccccctccagcctccaggtgtataatatacaagtacacccccatg 120
           |||||||||||||||||||||||||||||||||||| |||||    ||||||||||||||
Sbjct: 265 gatgggaagtgatgtccccctccagcctccaggtgtttaata----agtacacccccatg 320

                                                                       
Query: 121 cacaggtatgcatgcatacatacatatatatgtacacacacaatggggtggggaataaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaggtatgcatgcatacatacatatatatgtacacacacaatggggtggggaataaac 380

                                                                       
Query: 181 taattagaaaaataaggatgaagcactggagaagaaatagcaagaagagaggagaatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattagaaaaataaggatgaagcactggagaagaaatagcaagaagagaggagaatggg 440

                                                                       
Query: 241 gctggttcccacaaaggtgtgtccatatatctacctcagctgttgaatgtctcccacgtc 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gctggttcccacaaaggtgtgtccatatatccacctcagctgttgaatgtctcccacgtc 500

                                                                       
Query: 301 ttgttaatagtcccaccaatcaccaccaactctagtagacttcctccacacaggctacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgttaatagtcccaccaatcaccaccaactctagtagacttcctccacacaggctacaa 560

                                                                       
Query: 361 tgttaactctaggcttgagtctaagtcccccaggcaccagtctaagtccaccaggcacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttaactctaggcttgagtctaagtcccccaggcaccagtctaagtccaccaggcacca 620

                                                                       
Query: 421 tggtgacctcacctgtgtccccacgcccacacttgaccggctcacctcagtggtctcggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgacctcacctgtgtccccacgcccacacttgaccggctcacctcagtggtctcggc 680

                                                                       
Query: 481 tcaggcacattttgctttctctcttcagtctctactcaccctgtctccatttctgctcta 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaggcacatttttctttctctcttcagtctctactcaccctgtctccatttctgctcta 740

                                             
Query: 541 atgctctcccatcccctaagctctgtcatttccc 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 atgctctcccatcccctaagctctgtcatttccc 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)