BAC Information

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BAC

Clone NameMSMg01-511B05
Chromosome7 (Build37)
Map Location 139,583,820 - 139,584,244
singlet/doubletsinglet
Overlap genenone
Upstream geneAcadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
Downstream geneLOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511B05.T7 (MSMg01no511_b05.b1)MSMg01-511B05.TJ (MSMg01no511_b05.g1)
ACCAG584358AG584359
length732735
length of high quality
(start - end)
518 (68 - 585)423 (75 - 497)
definitionCHROMAT_FILE: MSMg01no511_b05.b1 PHD_FILE: MSMg01no511_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:50 2005CHROMAT_FILE: MSMg01no511_b05.g1 PHD_FILE: MSMg01no511_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAGCTCTTTCCCAGCTCAAGGACTTCCTAGGACACTGATGGAGGCTA
ACCCAACTTAGCTATATGTCAAAATCAATCCTTAAAGGCACTTATAATGA
AACAATACTGAAAGAGAGCACACAGATCCATACACCAGACTAATTCGGGG
ACATTATTGGAACATTCGTTATACAGGATGCCATGGTTCCAGGAGACTAA
GTTTTTGTGAAACTCTTTGCCTCAGGACTGCTTCCAGGCTTCTAGGCCTG
TCACACGAGTCACTACTGGAGTGATGTAGCAGTAAAGTGATAGATTACCA
TACATAAACCCCAGCATTTCATAAAACCAGACATGGCACTTGCCTATAAC
CCCAGCACTCAGGAGGTAGGATTAGGAAGATCAGAGTTCAAGGTTGTCTT
TGGCAGTATCTCAAGCTTGAGGAGACATGGTTTATCTGAGGCTCTGTCTC
ACAAACAGAAGGAAATAGTCCAGTGTTTGTAAGGTCACACTGTGTCCTAT
TAGAACCTGGGCCTATTAGCACCATCTGCACCATGGTCTCTGTGTGGTAG
GGACCGCAGTTCTAGACTCACTCAGTCATTCATCCCTGGTGCTCTCATCT
CAGTGCCGCTTTCACCACTGGAGCTGGCTCTGAATCTTAATTGCTTTCTG
CATTTTCTCCACGTGTCTTTGTGTTACCGCCA
AATGTCTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGAGGGCAGCAGTTTGGCTTGGAG
AACAGTCTTGAAGTACAGTCTTAAAAAACGAGACTGTCATCAGCTTTAAA
AATAGATATGGATGAGTCTGCGGCAGGTACGGATCCTAGCAGAAAGCTGG
GAACACGCTGGAGACCTGACCCTCGGGAGGGCGTTTCTGATTATCTAGAC
CAGTACTGCTCTGCTCTCACTGGTTTCCTTGTGGCTAATCATCTGACCAA
ATGCAATGAAATAAAGGGGTTACCCTGATTGACAGCTTCAGGGAGTAGGA
TCTATCGTGGTGGGGAAGGCATCATGAGCAGGAGAGGGCAGTCAGGAAGC
AGAAGGCAATGAATACTCATGCTCTGCTCACTTACTCCTTTCTAATCCCT
CTGAGGCTCCACTCCACCCCTAACCCTACCCTAGCCAGCTATTTAGCATG
GGTCTTTGCTCCTCGGTTAACCTTATCTTCATTCCTTCGCCCATCTCCTG
AGTGACTCTAGACCCCCTGTCAAACTGACACTCAATATAAACCATCTCAA
CCTGGAGAAGAAGAAAAAATAGCATCTCTGTCCTAGTCCTACGTTAAGTT
AGAGTGCACCTCCCAAGTATCTTAATGCTGGAGAGCTTCATTACTGCATG
GAGGTTTGACCCACAAGGAGCCACTTTTGCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_b05.g1 MSMg01no511_b05.g1 CHROMAT_FILE:
MSMg01no511_b05.g1 PHD_FILE: MSMg01no511_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:50 2005
         (423 letters)



>mm_chr7_139583616_139584438
          Length = 823

 Score =  721 bits (373), Expect = 0.0
 Identities = 410/425 (96%), Gaps = 6/425 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   agggcagcagtttggcttggagaacagtcttgaagtacagtcttaaaaaacgagactgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agggcagcagtttggcttggagaacagtcttgaagtacagtcttaaaaaacgagactgtc 264

                                                                       
Query: 65  atcagctttaaaaatagatatggatgagtctgcggcaggtacggatcctagcagaaagct 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 atcagctttaaaaatagatatggatgagtctgcggcaggtacggatcccagcagaaagct 324

                                                                       
Query: 125 gggaacacgctggagacctgaccctcgggagggcgtttctgattatctagaccagtactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggaacacgctggagacctgaccctcgggagggcgtttctgattatctagaccagtactg 384

                                                                       
Query: 185 ctctgctctcactggtttccttgtggctaatcatctgaccaaatgcaatgaaataaaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgctctcactggtttccttgtggctaatcatctgaccaaatgcaatgaaataaaggg 444

                                                                       
Query: 245 gttaccctgattgacagcttcagggagtaggatctatcgtggtggggaaggcatcatgag 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 445 gttaccctgactgacagcttcagggagtaggatctatcgtggtggggaaggcagcaggag 504

                                                                       
Query: 305 caggagagggcagtcaggaagcagaaggcaatgaatactcatgctctgctcacttactcc 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 caggagagggcagtcaggaagcagaaggcaatgaatactcatgctcagctcacttactcc 564

                                                                       
Query: 365 tttctaatccctctgaggctccactccaccccta-----a-ccctaccctagccagctat 418
           ||||||| |||||||||||||||| ||||||| |     | |||||||| ||||||||||
Sbjct: 565 tttctaagccctctgaggctccaccccacccccacccccatccctaccccagccagctat 624

                
Query: 419 ttagc 423
           |||||
Sbjct: 625 ttagc 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)