BAC Information

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BAC

Clone NameMSMg01-511C08
Chromosome7 (Build37)
Map Location 53,682,979 - 53,832,574
singlet/doubletdoublet
Overlap geneKcnc1, Sergef
Upstream geneRuvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1
Downstream geneTph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511C08.T7 (MSMg01no511_c08.b1)MSMg01-511C08.TJ (MSMg01no511_c08.g1)
ACCAG584412AG584413
length725747
length of high quality
(start - end)
395 (67 - 461)303 (75 - 377)
definitionCHROMAT_FILE: MSMg01no511_c08.b1 PHD_FILE: MSMg01no511_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:55 2005CHROMAT_FILE: MSMg01no511_c08.g1 PHD_FILE: MSMg01no511_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,682,979 - 53,683,373)(53,832,274 - 53,832,574)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCAGAGGATCCGCGGAAT
TCATCAAGATCTCCCTCAATATCATTGACTTTGTGGCCATTCTCCCCTTC
TACCTGGAGGTGGGCCTAATCGGCCTGTCCTCAAAAGCCGCCAAGGACGT
TCTGGGCTTCCTGCGCGTCGTCCGCTTCGTGCGCATCCTGCGCATCTTCA
AGCTGACCCGCCACTTCGTGGGCCTGAGGGTCCTGGGCCACACGCTCCGT
GCCAGCACCAACGAGTTCCTGCTGCTTATCATCTTCCTGGCCCTGGGAGT
GCTCATCTTTGCCACCATGATCTACTACGCCGAGAGGATAGGGGCACAGC
CCAATGACCCCAGCGCCAGCGAACACACACACTTTAAAAACATCCCCATC
GGCTTCTGGTGGGCTGTGGTCACCATGACGACACTGGGCTATGGAGACAT
GTATCCCCAGACGTGTTCTGGAATGTTGGTGGGAGCCTTGTGTGCTCTGG
CTGGTGTGCTGACCATTGTCATGTCGGCGCCTGTCATCGTGAACAATCTT
GGGATGTACTATTCTTTACCCATGGCTAAGCAGAAACTACCAAATAAAAT
AAAGAAGCCTACCCCGTGGCCACCACAGCTGGGATCTCCCAACCACTGTC
TATCCGCCGTATACTCTCCACACCATAGCACCTATAGTGACACCCGCTTC
TTTGGTCCCATGACGAAATTTTAAA
ATTGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAGGTGGTGTGCTGGTGCTGATAGT
GACAAGCAAGCCCACACGTGCTGGGTGACCGACCAGGTACTAGACTTCCG
AGAGATCAAAATGAAGAAGAGTGAGAGAGGGGAGCAGAGATGGCGAAATG
CACAGACCTGGGTGGGAAGGAAGATGGATGATGCTCTGTGTAGCTTGTCC
AACTTTTTTCCTGAAATGACTTAAAAATCTAAAGAGGGGGCTGGAGGGTT
GGCTCAGTGGTGAAGAGTGCTTCCTACTCTGTTCTTCATCTCCCACACTG
GGTAGTCCTGACCTTCTGTAACTCCTACTCTAGGGTTCTGATGCCCTCTG
CCAGTCTCTGTGGGTGGCCCATATACTTGTAAACACACTCTCTCTCTTTC
TCACCTTTTCACTCACACACTTACATCCACCCAATCTTTTTGAATCTTTA
CCAAATATTTAATTTTTCCTGAAGGGTTTGGTGGTACATACCTGTAACCC
CAGCTTTCTTGAGTGTGATTCTCGGGGATGTCTTGATTTCTACGTCCTCT
TGTTCCATTGAGTTAGTCCCACGATATGCTACGGTGCTCTGTAAAACCTA
TTTCTTTCGTTTCCAATTTTTTTTAAGAACCCCTTTTTTGTTCTCCCGAT
TACTTTGATGACCCTTTTTAGGTAAGAAATTTCCATTTTTTTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_c08.b1 MSMg01no511_c08.b1 CHROMAT_FILE:
MSMg01no511_c08.b1 PHD_FILE: MSMg01no511_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:55 2005
         (395 letters)



>mm_chr7_53682779_53683573
          Length = 795

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatatcattgactttgtggccattctccccttctacctggaggtgggcctaatcggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 caatatcattgactttgtggccattctccccttctacctggaggtgggcctaagcggcct 260

                                                                       
Query: 61  gtcctcaaaagccgccaaggacgttctgggcttcctgcgcgtcgtccgcttcgtgcgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctcaaaagccgccaaggacgttctgggcttcctgcgcgtcgtccgcttcgtgcgcat 320

                                                                       
Query: 121 cctgcgcatcttcaagctgacccgccacttcgtgggcctgagggtcctgggccacacgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcgcatcttcaagctgacccgccacttcgtgggcctgagggtcctgggccacacgct 380

                                                                       
Query: 181 ccgtgccagcaccaacgagttcctgctgcttatcatcttcctggccctgggagtgctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtgccagcaccaacgagttcctgctgcttatcatcttcctggccctgggagtgctcat 440

                                                                       
Query: 241 ctttgccaccatgatctactacgccgagaggataggggcacagcccaatgaccccagcgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgccaccatgatctactacgccgagaggataggggcacagcccaatgaccccagcgc 500

                                                                       
Query: 301 cagcgaacacacacactttaaaaacatccccatcggcttctggtgggctgtggtcaccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcgaacacacacactttaaaaacatccccatcggcttctggtgggctgtggtcaccat 560

                                              
Query: 361 gacgacactgggctatggagacatgtatccccaga 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 gacgacactgggctatggagacatgtatccccaga 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no511_c08.g1 MSMg01no511_c08.g1 CHROMAT_FILE:
MSMg01no511_c08.g1 PHD_FILE: MSMg01no511_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:55 2005
         (303 letters)



>mm_chr7_53832166_53832868
          Length = 703

 Score =  536 bits (277), Expect = e-157
 Identities = 295/301 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggtggtgtgctggtgctgatagtgacaagcaagcccacacgtgctgggtgaccgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctaggtggtgtgctggtgctgatagtgacaagcaagcccacacgtgctgggtgaccgacc 350

                                                                       
Query: 61  aggtactagacttccgagagatcaaaatgaagaagagtgagagaggggagcagagatggc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aggtactagacttcccagagatcaaaatgaagaagagtgagagaggggagcagagatggc 290

                                                                       
Query: 121 gaaatgcacagacctgggtgggaaggaagatggatgatgctctgtgtagcttgtccaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 289 gaaatgcacagacctgggtgggaaggaagatggatgatgctctgtgtagcttgtccaacc 230

                                                                       
Query: 181 tttttcctgaaatgacttaaaaatctaaagagggggctggagggttggctcagtggtgaa 240
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 229 tttttcctgaaatgacttaaaaatctaaaaagggggctggagagttggctcagtggtgaa 170

                                                                       
Query: 241 gagtgcttcctactctgttcttcatctcccacactgggtagtcctgaccttctgtaactc 300
           || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gactgcttcctactctgctcttcatctcccacactgggtagtcctgaccttctgtaactc 110

            
Query: 301 c 301
           |
Sbjct: 109 c 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)