BAC Information

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BAC

Clone NameMSMg01-511D03
Chromosome7 (Build37)
Map Location 6,588,588 - 6,588,721
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350
Downstream geneZim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511D03.T7 (MSMg01no511_d03.b1)MSMg01-511D03.TJ (MSMg01no511_d03.g1)
ACCAG584449AG584450
length740861
length of high quality
(start - end)
135 (171 - 305)---
definitionCHROMAT_FILE: MSMg01no511_d03.b1 PHD_FILE: MSMg01no511_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:59 2005CHROMAT_FILE: MSMg01no511_d03.g1 PHD_FILE: MSMg01no511_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCGGA
ATTCCACATATTTTCCCCTGATGAAATTAGGACAATAAATTCTGAGCCCA
GTGGCTGTGTCATCTGGTTGACTATAAATATTAAGATTGTCTGGTGTTTT
CCATTTGCCGTGATTCATGTAGGCAAGTTGAGAGGGTGCAGCCACATGGT
AGCCATCTGCTGAACCTGCCAAGGGACTGGATGGCTGGTGGAAAGTGAAT
GCTAGTTCCAGGCATTCTCAGGAGGGACACCTGCCAGGTGGCTTATCAAA
GCTATCTAGAAGAATGGACAACAGTCATGGTCTCAGGCGGCTGGCTGTTT
TGGGCAAGGAACAGACAGAGACTCGAGTGTCTTGGTGAATCTACCCTTGG
TGGCTGGATTATATCAACGTTGCTTGCATATATCCTGAGTAGTGTGGGTT
TATTTAAAATTACAGGATATATCTGCTGACCCGGTTCTGTCGTGTAGAAA
GTAAAGCTTTCTGCTATTTGGCAAAATTTTGTGGTTAGCGGTCTTTCTCT
TTGAGCCTGCGGAATTATCACACTAAACTCCCAGTGAAATACAAACTAGT
CCTTAACCTGTTTCTTAACCTTCCAAGAATAAACAAAAGGTTTGTTATAC
TTGCAAGAATTCCTAGCATCTATTTATTGTTAATTACTTTTTCCAAACTA
TTTCCTCAAAAATTTTATTCCGATACGCACCCCTCGTCCN
CATTATATTCTCTACCACAAAACCAACACCCCCTAACCTATCCTAAAATA
CTAAAACATATTATCACATATATTCTATATCTACCACATCACATACCACC
CTATTACCCACAACACTAACACACCATCCATTCTCATTGAAAAACTTAAT
ATACAAATATAAAAAAATAAACCCCCCCCAATTAATCCACAAATACCCCT
CGAACTAAAAAAAACAAAACCCGCTGTTACATCCACCATTTTGCCCCTCT
CTATTACGTTTCCGTTTTACACATTTTTTAATTACATCTAAAAACACAAC
AGTCACCTTATCTATAACATTACCACAATTCTTCAACCCCATACCCAAAC
TCTACTCACAATCCAATTAAACCAAAACAAAAAATAATAAGCAAAATTAA
CAAAAATCCTCCCACCAATATACAAAAAAAAAAATTACCTATTACCTTTT
ACCACACTCACCCACAGCACTATTTACCACCATCCTCCCAACATACCCCA
ATTAATCTAATCTCCCATTTCTGTTAAATATAAACCCCCTATAATACAAA
TACTACCCAACATTTTCAGCCCCGATATAAATTTTTACAATTTCATTCCC
CCCTTCTTATACCCCCAAAAATAAAAAAAATGTACCNCCCCCCACTTCTA
CAAAACACAGATTTAAATAAAAAATTTAACACACCAAATTATTCTAACAC
CCATTATACACTAGAGGCAATACATAGACATTAATTAGTTCAACTTTTCC
TTTACACAAAAAACAAAGTATCTTCCCGCGTTTCTAATTTTAATTAACCC
CTTCACACTGAATTTTAATTAAAAAATAGAACCACCCCACCCACACCCTT
ATACCATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_d03.b1 MSMg01no511_d03.b1 CHROMAT_FILE:
MSMg01no511_d03.b1 PHD_FILE: MSMg01no511_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:59 2005
         (135 letters)



>mm_chr7_6588388_6588922
          Length = 535

 Score =  244 bits (126), Expect = 2e-69
 Identities = 132/134 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcaagttgagagggtgcagccacatggtagccatctgctgaacctgccaagggactgg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcaagttgagagggtgcaaccacatggtagccatctgctgaacctgccaagggactgg 260

                                                                       
Query: 61  atggctggtggaaagtgaatgctagttccaggcattctcaggagggacacctgccaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggctggtggaaagtgaatgctagttccaggcattctcaggagggacacctgccaggtg 320

                         
Query: 121 gcttatcaaagcta 134
           ||||| ||||||||
Sbjct: 321 gcttagcaaagcta 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)