Query= MSMg01no511_j20.b1 MSMg01no511_j20.b1 CHROMAT_FILE:
MSMg01no511_j20.b1 PHD_FILE: MSMg01no511_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:32 2005
(597 letters)
>mm_chr7_117801504_117802501
Length = 998
Score = 1114 bits (576), Expect = 0.0
Identities = 591/596 (99%), Gaps = 4/596 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattgagcttgctatgtttccccgactcctgagagcagttgtttgggacagtgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcattgagcttgctatgtttccccgactcctgagagcagttgtttgggacagtgg 264
Query: 64 tggggtgacctttcagaggcagtgaaggttggttagagcaccttacagtgttggagcact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggggtgacctttcagaggcagtgaaggttggttagagcaccttacagtgttggagcact 324
Query: 124 gtcctctaggatgtaacatatgttctaaattagactcctgcacattgctctatttcccat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcctctaggatgtaacatatgttctaaattagactcctgcacattgctctatttcccat 384
Query: 184 caccagtttttatgggtccaagaatcaaagacagagagatgagt-ttttttttttttaaa 242
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 caccagtttttatgggtccaagaatcaaagacagagagatgagtcttttttttttttaa- 443
Query: 243 ctattgcttttagtaatccactgggcattcttttttttcttcttgttgccgccactttag 302
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 ctattgcttttagtaatccactgggcattcttttttt-cttcttgttgccgccactttag 502
Query: 303 gttttgctgctctcaaggtcttagtggcaaggcaggaattcagacgtgacacattgacac 362
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 503 gttttgctgctctcaaggtcttagtggcaaggcaggaattcagacgtggcacattgacac 562
Query: 363 atatgtgaagccccttgggactcctcagaccagtgaatcaacaggaaacaaagagctctc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atatgtgaagccccttgggactcctcagaccagtgaatcaacaggaaacaaagagctctc 622
Query: 423 tttcttcatttttttttttt-gaaacaggatgtcctagtttgaaacaggtgctatgatga 481
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttcttcatttttttttttttgaaacaggatgtcctagtttgaaacaggtgctatgatga 682
Query: 482 ccaaagcaacttcaggagaaaagggtttgtttgacttacatatcttgaattgtttattta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccaaagcaacttcaggagaaaagggtttgtttgacttacatatcttgaattgtttattta 742
Query: 542 gtctttatgtataggtatgagtcataggtgagtggaaattagagaacagcttttag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtctttatgtataggtatgagtcataggtgagtggaaattagagaacagcttttag 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 998
Length adjustment: 10
Effective length of query: 587
Effective length of database: 988
Effective search space: 579956
Effective search space used: 579956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_j20.g1 MSMg01no511_j20.g1 CHROMAT_FILE:
MSMg01no511_j20.g1 PHD_FILE: MSMg01no511_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:32 2005
(547 letters)
>mm_chr7_117986358_117987304
Length = 947
Score = 988 bits (511), Expect = 0.0
Identities = 536/547 (97%), Gaps = 5/547 (0%)
Strand = Plus / Minus
Query: 1 agagccctcaggactttcgtggattttgttttaccccttttgtgctggctggtttcggtt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agagccctcaggacttgcgtggattttgttttaccccttttgtgctggctggtttcggtt 561
Query: 61 tctgtcttaacatgattgtgtttttcaagactatgttatctttgtcatttggcaaaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 tctgtcttaacatgattgtgtttttcaagactatgttatctttgtcatttggcgtaaggg 501
Query: 121 aaccatatatataagggacatataggatagatattctctgaatatatctaaattctttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaccatatatataagggacatataggatagatattctctgaatatatctaaattctttta 441
Query: 181 actagaggaagttgatttctctttctaaaaaggtagagaaagtgcaaagagaatattttt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 actagaggaagttgatttctctttctaaaaaggtagagaaggtgcaaagagaatattttt 381
Query: 241 ctttctaagtcagagtgtacttactacttggtgtgtgctttgtcaggctgtctataatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttctaagtcagagtgtacttactacttggtgtgtgctttgtcaggctgtctataatac 321
Query: 301 ttgccaattttccaagaatccatgaaatgatgaatggataatctataaggaaaattaaca 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 ttgccaattttccaagaatccatgaaaggatgaatggataatctataaggaaaattaaca 261
Query: 361 actggtgctattagaactccagcacttactcattactctgtttgtttataggttttcagg 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 actggtgctattagaactccagcacttactcagtactctgtttgtttataggttttcagg 201
Query: 421 ttttattttattttattttattgagatttctttagttttatttctcctccttaatacctt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 -----ttttattttattttattgagatttctttagttttatttctcctccttaatacctt 146
Query: 481 tgaccccagaacaggcattctagattctataccgactctgaccagcctaatcattggata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tgaccccagaacaggcattctagattctataccgactctgaccagcctaatcattggata 86
Query: 541 tctgtat 547
|||||||
Sbjct: 85 tctgtat 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
