Query= MSMg01no511_k20.b1 MSMg01no511_k20.b1 CHROMAT_FILE:
MSMg01no511_k20.b1 PHD_FILE: MSMg01no511_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:36 2005
(518 letters)
>mm_chr7_141149388_141150305
Length = 918
Score = 967 bits (500), Expect = 0.0
Identities = 509/512 (99%)
Strand = Plus / Plus
Query: 5 ggaattctgaaaaatttccaacttctgtgcttgctgtctctgtgaactaaatgacactaa 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctgaaaaagatccaacttctgtgcttgctgtctctgtgaactaaatgacactaa 264
Query: 65 tactcctttgtctttggagagtgatttataatttacaaaggcgcatgatctcattcaatc 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 tactcctttgtctttggagagtgatttataatttacagaggcgcatgatctcattcaatc 324
Query: 125 caccccccttctctcccagggaccccatgaggcaagggaactaccactatgagataatgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caccccccttctctcccagggaccccatgaggcaagggaactaccactatgagataatgc 384
Query: 185 tggatcagcctgggaaattccaccctaggtgatggatgacgggggattgtctgggcctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggatcagcctgggaaattccaccctaggtgatggatgacgggggattgtctgggcctct 444
Query: 245 tggctctccccctcactatgggcttttgtgattaattcatccacttgcttaggaagttgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggctctccccctcactatgggcttttgtgattaattcatccacttgcttaggaagttgc 504
Query: 305 tctccatctgagaaaattaagaacaccattctctgggcaaggatgtgggatcatcataaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctccatctgagaaaattaagaacaccattctctgggcaaggatgtgggatcatcataaa 564
Query: 365 tgggaaccaaatagaaaaagatttacccaaaaacacaagctcagcaaaagagaaaactct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggaaccaaatagaaaaagatttacccaaaaacacaagctcagcaaaagagaaaactct 624
Query: 425 gacattgctaataaggaataaatcaaataaaggctattagcaagcccctggtgtgtgtgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacattgctaataaggaataaatcaaataaaggctattagcaagcccctggtgtgtgtgt 684
Query: 485 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 516
||||||||||||||||||||||||||||||||
Sbjct: 685 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_k20.g1 MSMg01no511_k20.g1 CHROMAT_FILE:
MSMg01no511_k20.g1 PHD_FILE: MSMg01no511_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:37 2005
(489 letters)
>mm_chr7_141330470_141331358
Length = 889
Score = 919 bits (475), Expect = 0.0
Identities = 487/493 (98%), Gaps = 4/493 (0%)
Strand = Plus / Minus
Query: 1 agtgtgtgtgtgtgtctgtgtgtgtgtctg----tgtgtgtgtgtgtgtctgtgtatggt 56
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 609 agtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtatggt 550
Query: 57 gtatgcacacttgtgaaaggaagaaaagaagggatggtaatttttatctataaattactg 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 549 gtatgcacacttgtgaaaggaagaaaagaagggatggtaatttttatctataaattcctg 490
Query: 117 accttttgctttctggtagaaaattgctatgagcaagcaggtatccacctgtgcaacaga 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 accttttgctttctggtagaaaattgctatgagcaagcaggtatccacctgtgcaacaga 430
Query: 177 gcacacactctccacggtaaaatctgccactaatagatactaaagggataaggatgaggc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gcacacactctccacggtaaaatctgccactaatagatactaaagggataaggatgaggc 370
Query: 237 tcgggtaggaagcatgagctggattttcatgggagagcggtttcacatgtcccaaagatt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcgggtaggaagcatgagctggattttcatgggagagcggtttcacatgtcccaaagatt 310
Query: 297 ctctgcctgtcactgatcgtagagatagaaactaaagccttgggctataaatggttcata 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctctgcctgtcactgatcgtagagatagaaactaaagccttgggctataaatggttcata 250
Query: 357 agataatattgctttgcctctaagccataggacctgagttcaaggtctggaatccgtgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agataatattgctttgcctctaagccataggacctgagttcaaggtctggaatccgtgtg 190
Query: 417 ctggaaggtaagaaacaactttggcacgttgtgcacttacctccacacgtgtgccatagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctggaaggtaagaaacaactttggcacgttgtgcacttacctccacacgtgtgccatagc 130
Query: 477 actgactcccagt 489
|||||||||||||
Sbjct: 129 actgactcccagt 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
