BAC Information

Click to search

BAC

Clone NameMSMg01-512J20
Chromosome7 (Build37)
Map Location 93,932,616 - 93,933,161
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1
Downstream geneEG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512J20.T7 (MSMg01no512_j20.b1)MSMg01-512J20.TJ (MSMg01no512_j20.g1)
ACCAG585533AG585534
length754763
length of high quality
(start - end)
608 (39 - 646)545 (70 - 614)
definitionCHROMAT_FILE: MSMg01no512_j20.b1 PHD_FILE: MSMg01no512_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:50 2005CHROMAT_FILE: MSMg01no512_j20.g1 PHD_FILE: MSMg01no512_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCAGAGGAATACTGAATGTCAGAGAAGCACCTGAAAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAATTGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTGAGATCAAAAATTCAGGTGACAGCAGATAC
TGTCGAGAATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAAGCTTGTAAACCACTCTGGAAATCAGTCTGGATGTTCCTCAGAATACT
GGACATAGTACTATGGGAGGATCCAGCAATACCTCTCATGGGCATATATC
CAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGGACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACATAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATG
GACCTGGAGGACATCATCTTGAGTGAGGTAACCCAATCACAAAGGAACTC
GCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGAT
ACACAAGATATAAGATAGAATTTGCAAAACGCATGAAACTCAAGAAGAAT
GAAGACTAAAGTGTGGACACTGTGCCCCTTCTTAGAATTGGGGACAAAAT
ACCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGCTACAATCTCATCAGAATGGGAACCTA
CATGACACTTTCACTATCAATAACAATTGCTCTCAAAACAAATTCTGCCA
TTAACCTAAAAGTACAGGCTCAGAGGTTCAGTCCATTATCATCGGGGCAT
GACCATGTCAGCATCCAGGTAGGCATGGTACTGGAGGAACTGAGAGATTT
ACATCTTCATCTGAAGCAGCTGAAAAACTGGCTTCCAGGCAGCTAGGATG
ACAGTCTTAAAGCCCATCCCCACAGTGACACAATTCCTCCAACATGGCCA
CAACCTACTGCAATGAGGCCACACCTCCAAACATACTTGCTGTTTTAACA
ATATCAGGATTGTATTCAAAATTCTAAATTAGAAACTCATGAAGCATCTG
GGTATTCTAGCAGATAATTTGTTAGTTGTTTGAAGAGAGGATGCCATGCA
AGCCATTTTCTATTTCACATTTTATGTCCTGGAATAAATGATGTTGCCTA
TAGTACTTGCTAACAATTGAAAGAGGAGTAATAATGTCACACGTTCATAA
ATATTTTCCTGAGAATGAAGGTCACTTATTGATTTCAAATTATTATAACT
CATTTTCTACATATTTTTATCTATAGTCTATAACCATTCCATATTTAAAT
TTCTTTATCCTCTTTCTCTATAAAGAAATGTTGAGAATTGTGGAAATAGT
ATACTATCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_j20.g1 MSMg01no512_j20.g1 CHROMAT_FILE:
MSMg01no512_j20.g1 PHD_FILE: MSMg01no512_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:50 2005
         (545 letters)



>mm_chr7_93932416_93933361
          Length = 946

 Score = 1025 bits (530), Expect = 0.0
 Identities = 542/546 (99%), Gaps = 1/546 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctacaatctcatcagaatgggaacctacatgacactttcactatcaataacaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctacaatctcatcagaatgggaacctacatgacactttcactatcaataacaattg 260

                                                                       
Query: 61  ctctcaaaacaaattctgccattaacctaaaagtacaggctcagaggttcagtccattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcaaaacaaattctgccattaacctaaaagtacaggctcagaggttcagtccattat 320

                                                                       
Query: 121 catcggggcatgaccatgtcagcatccaggtaggcatggtactggaggaactgagagatt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcggggaatgaccatgtcagcatccaggtaggcatggtactggaggaactgagagatt 380

                                                                       
Query: 181 tacatcttcatctgaagcagctgaaaaactggcttccaggcagctaggatgacagtctta 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatcttcatctgaagcagctgcaaaactggcttccaggcagctaggatgacagtctta 440

                                                                       
Query: 241 aagcccatccccacagtgacacaattcctccaacatggccacaacctactgcaatgaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcccatccccacagtgacacaattcctccaacatggccacaacctactgcaatgaggc 500

                                                                       
Query: 301 cacacctccaaacatacttgctgttttaacaatatcaggattgtattcaaaattctaaat 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacacctccaagcatacttgctgttttaacaatatcaggattgtattcaaaattctaaat 560

                                                                       
Query: 361 tagaaactcatgaagcatctgggtattctagcagataatttgttagttgtttgaagagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaaactcatgaagcatctgggtattctagcagataatttgttagttgtttgaagagag 620

                                                                       
Query: 421 gatgcc-atgcaagccattttctatttcacattttatgtcctggaataaatgatgttgcc 479
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgcccatgcaagccattttctatttcacattttatgtcctggaataaatgatgttgcc 680

                                                                       
Query: 480 tatagtacttgctaacaattgaaagaggagtaataatgtcacacgttcataaatattttc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatagtacttgctaacaattgaaagaggagtaataatgtcacacgttcataaatattttc 740

                 
Query: 540 ctgaga 545
           ||||||
Sbjct: 741 ctgaga 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space:   500760
Effective search space used:   500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)