Query= MSMg01no512_n15.b1 MSMg01no512_n15.b1 CHROMAT_FILE:
MSMg01no512_n15.b1 PHD_FILE: MSMg01no512_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:09 2005
(612 letters)
>mm_chr7_13395092_13396104
Length = 1013
Score = 1162 bits (601), Expect = 0.0
Identities = 607/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttctccgagcaagggaagtcacatctgaaaa-aaatcctttgttcactcaag 63
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcttttctgcgagcaagggaagtcacatctgaaaacaaatcctttgttcactcaag 264
Query: 64 gacagcatggcccatgtccattatgtttccgtgggctgctcttcaaggtgtgttctctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacagcatggcccatgtccattatgtttccgtgggctgctcttcaaggtgtgttctctga 324
Query: 124 tgtcgggcaagacaccagctccttctaaatattttcccacagtgaggacactggctggga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtcgggcaagacaccagctccttctaaatattttcccacagtgaggacactggctggga 384
Query: 184 ccctctctgttatgaagtctctgatgtactaccaggtgagtgttctgtctgaaggacttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctctctgttatgaagtctctgatgtactaccaggtgagtgttctgtctgaaggacttt 444
Query: 244 ccacacttcagacactggtatggagtctccttagtgtgaattctctgatgcttggtcaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccacacttcagacactggtatggagtctccttagtgtgaattctctgatgcttggtcaga 504
Query: 304 caggagctatccctaaaagctttaccacactgattgcactcataaggcctttcaccagta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggagctatccctaaaagctttaccacactgattgcactcataaggcctttcaccagta 564
Query: 364 tgaattctctggtgccggataagtccagcaatgttcctgaagagtttacgacactggtta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaattctctggtgccggataagtccagcaatgttcctgaagagtttacgacactggtta 624
Query: 424 caaccgtacggcttctcaccagtgtggaccctctgatgcctgatgagatatgcactctca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaccgtacggcttctcaccagtgtggaccctctgatgcctgatgagatatgcactctca 684
Query: 484 atgaaagttttcccacactctttacattcatagggcttctccccagaatgaattttctga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgaaagttttcccacactctttacattcatagggcttctccccagaatgaattttctga 744
Query: 544 tgcacaatgaggtgagagttgcgactgaaggatttcccacactctacacattcaaaaggc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgcacaatgaggtgagagttgcgactgaaggatttcccacactctacacattcaaaaggc 804
Query: 604 ttctctcca 612
|||||||||
Sbjct: 805 ttctctcca 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_n15.g1 MSMg01no512_n15.g1 CHROMAT_FILE:
MSMg01no512_n15.g1 PHD_FILE: MSMg01no512_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:09 2005
(561 letters)
>mm_chr7_13576010_13576970
Length = 961
Score = 785 bits (406), Expect = 0.0
Identities = 466/488 (95%), Gaps = 5/488 (1%)
Strand = Plus / Minus
Query: 1 tacggatccacagagggcaatgtgggcttaatgaactatgtgggccactgcggggctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tacggatccacagagggcaatgtgggcttaatgaactatgtgggccactgcggggctgtg 509
Query: 61 ggaaggaccagctgcatccttcgagtgagtcagcgggactccccagtgtgatggtggtcc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 508 ggaaggaccagctgcatccttcgagtgagtcagtgggactccccagtgtgatggtggtcc 449
Query: 121 tgaggctgagcccctggtacctttgccaatgtttcccaccctctatcccagatgctgact 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 448 tgaggctgagcccctggtacctttgccaatgtttcccaccctctttcccagatgctgact 389
Query: 181 ccctttgagcttgtacagttcgacatagagacagcagagcctctgagggacaaacagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccctttgagcttgtacagttcgacatagagacagcagagcctctgagggacaaacagggt 329
Query: 241 ttttgcattcctgtggagccaggtaaggaagtcaggaagcctgctttggatgtgcgaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttttgcattcctgtggagccaggtaaggaagtcaggaagcctgctttggatgtgcgaggg 269
Query: 301 gtttgtgagctaaactttcacttccttggctggaacgagctgcccaaagtcctttttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtttgtgagctaaactttcacttccttggctggaacgagctgcccaaagtcctttttaaa 209
Query: 361 tttttc--ttcttcttcttcttcttcttct---tcttcttcttcttcttcttcttcttct 415
|||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 208 tttttcttttcttcttcttcttcttcttcttcctcttcttcttcctcttcttcttcccct 149
Query: 416 tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcctcttcttct 475
|||||||| |||||||||| |||| |||| |||||||||| ||||| ||||||||
Sbjct: 148 tcttcttccccttcttcttccccttccccttccccttcttcttccccttccccttcttct 89
Query: 476 tcctcttc 483
|| |||||
Sbjct: 88 tcatcttc 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
