Query= MSMg01no512_p12.b1 MSMg01no512_p12.b1 CHROMAT_FILE:
MSMg01no512_p12.b1 PHD_FILE: MSMg01no512_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:18 2005
(631 letters)
>mm_chr7_117551726_117552752
Length = 1027
Score = 1116 bits (577), Expect = 0.0
Identities = 604/615 (98%), Gaps = 4/615 (0%)
Strand = Plus / Plus
Query: 17 cctaggcctccctacacaaggactgtaccctggaattgtgagctaaaataatcagtttct 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cctaggcctccctacacaaggactgtaccctggaattgtgagctaaaataatcagtttct 276
Query: 77 ctaataagatacctctgttaggatattttattatagcaacagaaatgaaagtaggactct 136
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 277 ctaataagatacctctgttaggatattttattatagcaacagaaatgaaaataggactct 336
Query: 137 attttatgctaaatattaggtaatgaataaatcaaagctgcaattagcaaagggcttgaa 196
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 337 attttatgctaaatattaggtaatgaataaatcaaagctgcaattagcacagggcttgaa 396
Query: 197 gactcaaaatgggccatatttttctcttcttttttggccctcagacatgctctccttcat 256
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggctcaaaatgggccatatttttctcttcttttttggccctcagacatgctctccttcat 456
Query: 257 cctcagtgtacaaatcttctctttcatctcagttttgagttcagataccacttcttcatg 316
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 457 cctcagtgtacaaatcttctctttcatctcagttttgagtttagataccacttcttcatg 516
Query: 317 gtttatagtttcttacttactgctctttgttttgtatcaaatgtctgtatttggttaaat 376
||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct: 517 gtttatagtttcttact----gctctttgttttgtatcaaatgcctgtatttgggtaaat 572
Query: 377 gaacaaagtgtagataatgatataagactacctcatgaagactcatatacaaaagagaat 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaacaaagtgtagataatgatataagactacctcatgaagactcatatacaaaagagaat 632
Query: 437 tgtactggtatctaatgtcacaggtctatttttcaacaactcaaattgaaaagcatagaa 496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 633 tgtactggtatctaatgtcacaggtctatttttcaacaactcaaattgaaaagcatagca 692
Query: 497 tactctattatttgtaaagaagatgaaacaataaagctacccaaatttcacatttttgtg 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tactctattatttgtaaagaagatgaaacaataaagctacccaaatttcacatttttgtg 752
Query: 557 ttaagtggtttggtaaatgatgtacataggtgcctatgtctaacagatgtcaaacacagt 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttaagtggtttggtaaatgatgtacataggtgcctatgtctaacagatgtcaaacacagt 812
Query: 617 cttcttgaaaggttt 631
|||||||||||||||
Sbjct: 813 cttcttgaaaggttt 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1027
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1017
Effective search space: 631557
Effective search space used: 631557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_p12.g1 MSMg01no512_p12.g1 CHROMAT_FILE:
MSMg01no512_p12.g1 PHD_FILE: MSMg01no512_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:18 2005
(611 letters)
>mm_chr7_117744719_117745729
Length = 1011
Score = 1085 bits (561), Expect = 0.0
Identities = 597/613 (97%), Gaps = 7/613 (1%)
Strand = Plus / Minus
Query: 3 tctgtgtagctatggggtaagacttttggcattgttggctgctttggggtcacccatgct 62
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 998 tctgtgtagctatggggtaagacttttggcattgttggctgctttagggtcacccatgct 939
Query: 63 ttctgtaagtcagcacaataaacccacgtgttcttcaagttggactttggtggagtaata 122
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 938 ttctgtaagtcagctcaataaacccaagtgttcttcaagttggactttggtggagtaata 879
Query: 123 cttcggtttgtcattggtgctctataa-------tgggaggttgacatctctttgcctcc 175
||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 878 cttcggtttgtcattggtgctctataacgggggggggggggttgacatctctttgcctcc 819
Query: 176 ccagagaaagaattcttgcaacaaatgctaaggatggttattcccattcttaggtttctt 235
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 818 ccagagaaagaattcttgcaacaaatgctaaggatggttatttccatccttaggtttctt 759
Query: 236 cttttggaacaagcaaagactctttctttgtactggcatgacaataatactaggatgaga 295
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 758 cttttggaacaagcaaagactctttctttgtactggcatggcagtaatactaggatgaga 699
Query: 296 ctgccaaggaatattctccctgatacatttcaggactctgaataattacagaacctaagt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ctgccaaggaatattctccctgatacatttcaggactctgaataattacagaacctaagt 639
Query: 356 cagaatgaaaatggacacagatttttggaaatatcttttatacatttagttccagctgtg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cagaatgaaaatggacacagatttttggaaatatcttttatacatttagttccagctgtg 579
Query: 416 tctgaaaaccaaaagaatattttcaatagtttttaggtctacactaaaatatcatccaga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctgaaaaccaaaagaatattttcaatagtttttaggtctacactaaaatatcatccaga 519
Query: 476 aagattatgctaatttagcagtataggaatatgcctattttctttgtggaaattttaatt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aagattatgctaatttagcagtataggaatatgcctattttctttgtggaaattttaatt 459
Query: 536 aggcaaacaaaacctaccacttaataggagctagtgggtaagcagtagcatagaaaactt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggcaaacaaaacctaccacttaataggagctagtgggtaagcagtagcatagaaaactt 399
Query: 596 ggatttcataaag 608
|||||||||||||
Sbjct: 398 ggatttcataaag 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
