BAC Information

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BAC

Clone NameMSMg01-512P23
Chromosome7 (Build37)
Map Location 143,519,174 - 143,519,776
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxi2, Clrn3, Ptpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512P23.T7 (MSMg01no512_p23.b1)MSMg01-512P23.TJ (MSMg01no512_p23.g1)
ACCAG585827AG585828
length755761
length of high quality
(start - end)
341 (320 - 660)598 (65 - 662)
definitionCHROMAT_FILE: MSMg01no512_p23.b1 PHD_FILE: MSMg01no512_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:20 2005CHROMAT_FILE: MSMg01no512_p23.g1 PHD_FILE: MSMg01no512_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTCGAAGAGGAGGGGCGGAATTCACA
AAGTTCTCCTACCAGGAAGTCTATGGCTACAATCCTGGCCAGCTCACTCA
AGCACCAGAATGCTTACATGTAAAAAAATAAAATAAAATAAAAAATAAAA
AGAGGGGGGAGTGCTCTGGGCTAGGTTGTAGAAGAGGCAGATTAAAGTAG
TTCTATGAAGCTGGATTTTCATCACCACTAGATAGGCTGCTGTCTCTTAT
TCAAGGTGGCTATGTAGCTGTCAAATGTGGGAGGTCTGTGTTGGAATTCT
GCTGGAGAAACATCTTATGCATCTAGAGCTGTGAGTTCTCAGGGAGACCA
ATAAAACGGCATCAGCTGGGAAATGGTTCAGCAGAGAGAAGCACTTGCTC
GGCAAGCAAAGACTTGAGTGTGACTCTCCAGCACCCATGGAAAACCCAGG
GAAGGTGAGTGCACCTGCCTGTACCGCACATTGGCACGGGAGACAGAGCT
CTATTAGCCAGCCAGCCTAGACAAAATGGGGAGCTGCAGATTTAGCGAGA
GACCCCAATGAAAAAAGATAATGCAGGGGCTGATATGAGAAGATAGCCAA
TGCCTTCTTCTACCCTCTAATTATAGAAACATGGGCGCACATAGTTATGT
ACAAAGAAGTGGAAGACAAAGAAATTAGACAGTGATCAAATAAACAAGGA
AAGACTGAGTAGTGGGATACAGAATCAAAGACTAAAATTGCTGCCGAAAC
TGGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTCCTGGGACATGCTCCAGACAGATTCCCATTTTG
CTCAGTGCTACAAACATGGAGGACATGCTGGAAAGCTCACTGACTTTCCT
GTTTAAACAGTCATCTGCAACTTAACCCTAAGTTAGCCAGGGCTCAGAGG
TGCATGCATGTCTCATTTGAGAAGCAGTGAGTTTTACAGAAAGGACGCAG
AACAAAACCAGACGCACTCTTCTTGTAGTCAGCTGTAGATTTATTCCCAG
CTCTGGTGGAATATGGTGCCTTGAGTGTCATTTGTTTGCAAATGTTTCCA
ATGTGGCCCAGAATCACAAGGCTGCTCTCAGCACACAGATGTGTGAGTGA
ACCCTCTCCAGTTCTCAGGCTCTGGAGGTGGAGGTAGCCCCACCTCCCAT
CAGACTAGCCTACAGAGACCCAAGCTGACATTGACTGGCTCCTTCTACTT
CTGGCTGGGTTCTTGGTGCTCATACTGGCTTTGTTTTCTCCACGATGTTT
CCAGCTTAGATGTTTCCAATTACATTTGGCCCATCCACACTGGCTGTGCT
GACGTAAGCCTGTCATTGGCGTCACCATCACCATCCGGGGACATTTCCTG
TGGACCTCTTGCCAACTGTTGCTAGTTCCACTAATGGTCCTCTACTGTCT
GTCATGTGGCAGGCCTAGTGCTAAATGCTGGGCAGACAGCATGTACACAG
CATCTTGGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_p23.g1 MSMg01no512_p23.g1 CHROMAT_FILE:
MSMg01no512_p23.g1 PHD_FILE: MSMg01no512_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:21 2005
         (598 letters)



>mm_chr7_143518974_143519976
          Length = 1003

 Score = 1093 bits (565), Expect = 0.0
 Identities = 592/603 (98%), Gaps = 5/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctgggacatgctccagacagattcccattttgctcagtgctacaaacatggaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 attcctgggacatgctccagacagattcccattttgctcagtgctacaaacatggaggac 744

                                                                       
Query: 61  atgctggaaagctcactgactttcctgtttaaacagtcatctgc-aacttaa----ccct 115
           |||||||||||||||||||||||||||||||||||||||||||| |||||||     |||
Sbjct: 743 atgctggaaagctcactgactttcctgtttaaacagtcatctgcaaacttaatgtttcct 684

                                                                       
Query: 116 aagttagccagggctcagaggtgcatgcatgtctcatttgagaagcagtgagttttacag 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aagttagccagggctcagaggtgcatgcatgtctcatttgagaagcagtgagttttacag 624

                                                                       
Query: 176 aaaggacgcagaacaaaaccagacgcactcttcttgtagtcagctgtagatttattccca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaggacgcagaacaaaaccagacgcactcttcttgtagtcagctgtagatttattccca 564

                                                                       
Query: 236 gctctggtggaatatggtgccttgagtgtcatttgtttgcaaatgtttccaatgtggccc 295
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gctctggtagaatatggtgccttgagtgtcatttgtttgcaaatgtttccaatgtggccc 504

                                                                       
Query: 296 agaatcacaaggctgctctcagcacacagatgtgtgagtgaaccctctccagttctcagg 355
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaatcacaaggctgctcccagcacacagatgtgtgagtgaaccctctccagttctcagg 444

                                                                       
Query: 356 ctctggaggtggaggtagccccacctcccatcagactagcctacagagacccaagctgac 415
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 443 ctctggaggtggaggtagccccacctcccatcagactagcctacagagatccaagctgac 384

                                                                       
Query: 416 attgactggctccttctacttctggctgggttcttggtgctcatactggctttgttttct 475
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attgactggctccttctactcctggctgggttcttggtgctcatactggctttgttttct 324

                                                                       
Query: 476 ccacgatgtttccagcttagatgtttccaattacatttggcccatccacactggctgtgc 535
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccacgatatttccagcttagatgtttccaattacatttggcccatccacactggctgtgc 264

                                                                       
Query: 536 tgacgtaagcctgtcattggcgtcaccatcaccatccggggacatttcctgtggacctct 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgacgtaagcctgtcattggcgtcaccatcaccatccggggacatttcctgtggacctct 204

              
Query: 596 tgc 598
           |||
Sbjct: 203 tgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1003
Length adjustment: 10
Effective length of query: 588
Effective length of database: 993
Effective search space:   583884
Effective search space used:   583884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)