Query= MSMg01no513_i08.b1 MSMg01no513_i08.b1 CHROMAT_FILE:
MSMg01no513_i08.b1 PHD_FILE: MSMg01no513_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:02 2005
(706 letters)
>mm_chr7_123745138_123746243
Length = 1106
Score = 1255 bits (649), Expect = 0.0
Identities = 690/705 (97%), Gaps = 5/705 (0%)
Strand = Plus / Minus
Query: 5 gaattctattggtccatgttagaactctgaactttcaatatcctatataacagtagcata 64
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 832 gaattctattggtccatgttagaactctgaactttcaaaatcctatataagagtagcat- 774
Query: 65 gtgaagggaagaaatctgaagcacttttttcattccttttatgtaccttaaatcactttc 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 773 gtgaagggaagaaatctgaagcac-tttttcattccttttatgtaccttaaatcactttc 715
Query: 125 ctatcaaattccaagtttttcacttactcagacgttcatcacttgcattaaccaacctca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctatcaaattccaagtttttcacttactcagacgttcatcacttgcattaaccaacctca 655
Query: 185 aaacaccttctaagaccctgaaacactttcttagatccctataacttaagatttcatgcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaacaccttctaagaccctgaaacactttcttagatccctataacttaagatttcatgcc 595
Query: 245 taagactttacataaactttatgcctttttcctatccaattattgaccatgagacacagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taagactttacataaactttatgcctttttcctatccaattattgaccatgagacacagg 535
Query: 305 tggttaatcattgggagctgtcattgtaagtgaattcctttaaaggtataacaaaattta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 534 tggttaatcattgggagctgtcattgtaagtgaattcctttaaaggtataacataattta 475
Query: 365 catctgaaacctgtttat---tttttttatcatgaagcctatgagcaagacaaacctgtt 421
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 474 catctgaaacctgtttatttatttttttatcatgaagcctatgagcaagacaaacctgtt 415
Query: 422 tgcttttctaataagagatctggcagttttaactagctaataaattaactaatgaactaa 481
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 414 tgcttttctaataagagatctggcagttttaactaactaataaattaactaatgaactta 355
Query: 482 cacggtaagtggattaccttagggtaaagagctagttgcctattgttctctgtcaagcta 541
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cacagtaagtggattaccttagggtaaagagctagttgcctattgttctctgtcaagcta 295
Query: 542 ccattagcttaaccattaatacgatcagagatctgagaaggatatattatattctagatg 601
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccattagcttagccattaatacgatcagagatctgagaaggatatattatattctagatg 235
Query: 602 ccatatattaattaaaatggcagagattagtccatagtctactgcctaaacagttctccc 661
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 234 ccatatattaattaaaatggcagagattagtccatagtctactgcctagacagttcttcc 175
Query: 662 aggttcctatggtctccatcacaatgtgggcagaggcagtctggc 706
|||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 174 aggttcctatggtctccatcacaaagtgggcagaggcagtctggc 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no513_i08.g1 MSMg01no513_i08.g1 CHROMAT_FILE:
MSMg01no513_i08.g1 PHD_FILE: MSMg01no513_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:02 2005
(567 letters)
>mm_chr7_123617139_123618105
Length = 967
Score = 911 bits (471), Expect = 0.0
Identities = 537/577 (93%), Gaps = 32/577 (5%)
Strand = Plus / Plus
Query: 1 ctgatcttcctgcctttacctcccaagtgcaggggttatgggcctgcaccatagctcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatcttcctgcctttacctcccaagtgcaggggttatgggcctgcaccatagctcctg 260
Query: 61 ccttaatactttattatgggactcagtcagaacttgagctgtgctgtgtgcttttagaga 120
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 261 ccttaatactttattatgggactcagtcaggacttgagctgtgctgtctgcttttagaga 320
Query: 121 aaagagaggtcaactcagatatcagaaagcaggcatggtgtggggtgcgggcccgtaatc 180
|||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aaagggaggtcacctcagatatcagaaagcaggcatggtgtggggtgcaggcccgtaatc 380
Query: 181 caggtgctttagaggctgagacaaaaagattctgacaagttcctgcgcatcctaggaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggtgctttagaggctgagacaaaaagattctgacaagttcctgcgcatcctaggaaac 440
Query: 241 aaacaaacaaa----attaaaaacaaaactaaaaacaagccgggcgtggtggtgcacgcc 296
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaaacaaacaaaactaaaaacaaaactaaaaacaagccgggcgtggtggtgcacgcc 500
Query: 297 tttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccaacctgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccaacctgg 560
Query: 357 tctacaaagtgagttccaggacagtcagggctatacagagaaaccctgtcttgaaaaaca 416
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 tctacaaagtgagttccaggacagccagggctatacagagaaaccctgtcttgaaaaaca 620
Query: 417 aaaacaaaaacaaaaacaaaaacaaaaacaaaacacaaaacaaaaaaaccaaaccaaaaa 476
||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 621 aaaacaaaaacaaaa------------------cacaaaacaaaaaa-ccaaaccaaaaa 661
Query: 477 tccaacaacaacaaccaaaacccaaaacaaaaacaaa------gaagagttttttgtgtg 530
|||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct: 662 tccaacaacaac---caaaacccaaaacaaaaacaaaaacaaagaagagttctttgtgtg 718
Query: 531 ttttgtttagcacttcttcaacagatgccctttaatt 567
|||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttttgtttagcacttcttcaacagatgccctttaatt 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
