BAC Information

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BAC

Clone NameMSMg01-514L23
Chromosome7 (Build37)
Map Location 51,065,279 - 51,065,845
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8
Downstream geneKlk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514L23.T7 (MSMg01no514_l23.b1)MSMg01-514L23.TJ (MSMg01no514_l23.g1)
ACCAG587156AG587157
length751747
length of high quality
(start - end)		569 (44 - 612)567 (73 - 639)
definitionCHROMAT_FILE: MSMg01no514_l23.b1 PHD_FILE: MSMg01no514_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:45 2005CHROMAT_FILE: MSMg01no514_l23.g1 PHD_FILE: MSMg01no514_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGTCTCCTGGCTTGAGAAGAAATCAGGGCCTTGGCTGGTTTTTGG
AAATTCTGGAAAGGGTGAGGTCTCAGGAAACTAAATTTGTATAAATGAAT
CCAGGAAAGGGAGCTTGGGGTGGATTTGGGGTTTCTTGGATTGGGCATGA
AGTGGCAGCTGTGATGAAGAGATTGAGGAACTTCCAGGTAAAAGGAGCAG
GGTCAAGGCTAGGGCGTGGGCTCATTTTAGGGTCTGTGGTGGAGATGACA
TCTAAGAGGGGTGGGGCTCCCTAAGAATGGAGTTTGAGATGGGACAAGCA
GTGAGAGAAGGAAATTCTGGGTGTCTGTGACAGACAGGATCTGCTTCCTG
TGGAGGTGGGCAAATGATCTGGGTATTGGAGAGGCTCAGGGTTCTCTTGG
AGGCATCCTCTGGACAGGAGTGGAAACATAGTTAGATCAAGTCAGGCCAC
TGTGAGGCAAAGAGGAGGACCCAGCTGATGCAAGGTACTAGGGTAAGGCA
TTGGGGTCTTTGGGGTGTCCTGCACAGAGTGAGAACTAGAGCTGTGCAGT
GGGGATCTGGCAAGATGGGACAGGAGCTGATGAAGGGTAGAAACACTGAG
GAGACTGTGGCTCATGCCAGGAAGCATCAAAAGGAAGAAAGGGGCCNATG
CAGAGCATTTTGTAACAGAAGGAATCTTGTCNAGCCATGCATAGCTGCAC
T

CTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAAGTGGATTTGACTTTCTATTGAGGG
CCATGTATGAGTTGGCCTTGTATTCAACTCCAAGAGTGAATAGCTATAAC
CCAGAAGGATGCTTGGAACAGTCAGGAGAGGGAGACATGCCATTGTGAGT
GTGTCCACTGGCTCAGAAACAACATTGCAACCCCAGAAGGTCACCTCCGT
TCATCCACAGTGTGTTGGTCTAACCTACTGCCATGTTCGTCATGGTTCTA
AGAAGACTGGTACAGTCTCAGAATTGGCACCCAGGAGGGGGACACCACCA
GGCAGGATAAAAAGTGAGCCACCTTTTAAAAGTTTTTTATGAGAGTATCT
TTTTATGAGAGTATCTTGTGCAAGCCTACTCACATAGCCAAAGACAACCC
TGAATTCCCAACCCTCTTGCTGCCACCTTGGGAGCTGGAATCACAGGTAT
GTGACACCACATCTACCTACCTGTCTGTGTCTTTCTCTGAACATAAGAAT
CCCCCAGTGAGGGCCTAGGGTTTGACTAGCAGTAGAGCACTCACCTACTA
TGTGCAAGGTGTTGCGTTTAATCCCAATACTCTCACCACCATAGAAAGGT
AGAGTGGAATCTTTTTAAAAAAAAAAAGTGAGAAAATGAGACCTGGTGGG
GGGAGGGGACACTATTAGATAATGCTTGATACTTACATCTTTGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_l23.g1 MSMg01no514_l23.g1 CHROMAT_FILE:
MSMg01no514_l23.g1 PHD_FILE: MSMg01no514_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:45 2005
         (567 letters)



>mm_chr7_51065079_51066045
          Length = 967

 Score = 1042 bits (539), Expect = 0.0
 Identities = 560/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtggatttgactttctattgagggccatgtatgagttggccttgtattcaactcca 60
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 agaagtggatttggctttctattgagggccatgtatgagctggccttgtattcaactcca 260

                                                                       
Query: 61  agagtgaatagctataacccagaaggatgcttggaacagtcaggagagggagacatgcca 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 agagtgaatagctataacccagaaggatgcttggaacagttaggagagggagacatgcca 320

                                                                       
Query: 121 ttgtgagtgtgtccactggctcagaaacaacattgcaaccccagaaggtcacctccgttc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcgagtgtgtccactggctcagaaacaacattgcaaccccagaaggtcacctccgttc 380

                                                                       
Query: 181 atccacagtgtgttggtctaacctactgccatgttcgtcatggttctaagaagactggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccacagtgtgttggtctaacctactgccatgttcgtcatggttctaagaagactggta 440

                                                                       
Query: 241 cagtctcagaattggcacccaggagggggacaccaccaggcaggataaaaagtgagccac 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cagtctcagaattggcacccaggagggggacaccaccagtcaggataaaaagtgagccac 500

                                                                       
Query: 301 cttttaaaagttttttatgagagtatctttttatgagagtatcttgtgcaagcctactca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttaaaagttttttatgagagtatctttttatgagagtatcttgtgcaagcctactca 560

                                                                       
Query: 361 catagccaaagacaaccctgaattcccaaccctcttgctgccaccttgggagctggaatc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 catagccaaagacaaccctgaattcccaaccctcttgccgccaccttgggagctggaatc 620

                                                                       
Query: 421 acaggtatgtgacaccacatctacctacctgtctgtgtctttctctgaacataagaatcc 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 acaggtatgtgacaccacatctacctacctgtctgtgtctttctatgaacataagaatcc 680

                                                                       
Query: 481 cccagtgagggcctagggtttgactagcagtagagcactcacctactatgtgcaaggtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccagtgagggcctagggtttgactagcagtagagcactcacctactatgtgcaaggtgt 740

                                      
Query: 541 tgcgtttaatcccaatactctcaccac 567
           |||||||||||||||||||||||||||
Sbjct: 741 tgcgtttaatcccaatactctcaccac 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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